SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144938

Length: 562 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene144938
AATGTACCATCACTCGCGCTTCTTGATTAATGAAAACATCAAAAAGCATCACAAAATTTATATGCAATCATACATATGCACTTAGCTTGATGAGAAAATGCACCAACAACAAAGAGTTGGTGCGCCCCGCCATTACACGGTTTGCCACGAGTTTCATATCTCTTCAATCCCTCTTGAATTCTATGTGGGATTTGAAGAGAATGTTTCTTTCAGAGGATTGGCGTGCTTCGTCAAGGAGCCGCAAACCAGAAGGAGAGGTTGTATGCAGACTAGTTTCATACCAGGAAAACTTCTGGGTGGGAGTGCAGGAGGTGTGCGCCGTTACTAAACCTTTGGTAAAGGTTCTTCGGTTGGTTGATGGTGAGAAGCCCGCAATGGGCTATTTGTATGAAGCCATGGACAGGGCCAAAGAAGCCATTCGGGCCTACTATGATGATAAGGGAGATGATGGGTTTCAGAAACAACTCCTTCTATGGGGAGTGATTGATGAGCGATGGAACAACACACTCCATCGTCCCATTCATGTTGCTGGGCTTTTTCTGAACCCTGCATTTTCTCCCAT

Ace file of the UniGene sp_v3.0_unigene144938 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=DNA binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	42%
Sma3	Chromosome chr9 scaffold_90, whole genome shotgun sequence	-	-	9.228e-06	-

Source	Gene names
Sma3	GSVIVT00000858001; GSVIVT00001531001; GSVIVT00011135001; GSVIVT00014165001; GSVIVT00022282001; GSVIVT00022285001; GSVIVT00022661001; GSVIVT00023988001; GSVIVT00024230001; GSVIVT00025033001; GSVIVT00029236001; GSVIVT00030936001; GSVIVT00031007001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	photosystem I	GO:0009522	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Photosystem I PsaA/PsaB	IPR001280	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RBQ7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 173 aas, your sequence is shorter than subject: 186 - 670

Fln protein: CTITRAS*LMKTSKSITKFICNHTYALSLMRKCTNNKELVRPAITRFATSFISLQSLLNSMWDLKRMFLSEDWRASSRSRKPEGEVVCRLVSYQENFWVGVQEVCAVTKPLVKVLRLVDGEKPAMGYLYEAMDRAKEAIRAYYDDKGDDGFQKQLLLWGVIDERWNNTLHRPIHVAGLFLNPAFSP

Protein Length: 187

Fln nts: AATGTACCATCACTCGCGCTTCTTGATTAATGAAAACATCAAAAAGCATCACAAAATTTATATGCAATCATACATATGCACTTAGCTTGATGAGAAAATGCACCAACAACAAAGAGTTGGTGCGCCCCGCCATTACACGGTTTGCCACGAGTTTCATATCTCTTCAATCCCTCTTGAATTCTATGTGGGATTTGAAGAGAATGTTTCTTTCAGAGGATTGGCGTGCTTCGTCAAGGAGCCGCAAACCAGAAGGAGAGGTTGTATGCAGACTAGTTTCATACCAGGAAAACTTCTGGGTGGGAGTGCAGGAGGTGTGCGCCGTTACTAAACCTTTGGTAAAGGTTCTTCGGTTGGTTGATGGTGAGAAGCCCGCAATGGGCTATTTGTATGAAGCCATGGACAGGGCCAAAGAAGCCATTCGGGCCTACTATGATGATAAGGGAGATGATGGGTTTCAGAAACAACTCCTTCTATGGGGAGTGATTGATGAGCGATGGAACAACACACTCCATCGTCCCATTCATGTTGCTGGGCTTTTTCTGAACCCTGCATTTTCTCCCAT

Fln Alignment:

AllPine_a_rep_c116053___LMKTSKSITKFICNHTYALSLMRKCTNNKELVRPAITRFATSFISLQSLLNSMWDLKRMFLSEDWRASSRSRKPEGEVVCRLVSYQENFWVGVQEVCAVTKPLVKVLRLVDGEKPAMGYLYEAMDRAKEAIRAYYDDKGDDGFQKQLLLWGVIDERWNNTLHRPIHVAGLFLNPA
B9RBQ7________________VMEEANTITKYIYSHAWTLNMMRRFTGGRELIRPRITRYVSNYLSLRAIVIQEDNLKHMFSHSEWLSSMHSRRPDAQIVKSFLS-QDRFWKFAHEAVSISEPLIKILRIVDGDMPAMGYIYEVLERAKVSIKAYY--KGIE--DKYMPIWEIIDRRWNIQLHSPLHAAAAFLNPS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain