SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144902

Length: 294 nt

UniGene Fasta

>sp_v3.0_unigene144902
CGTCGTGACCTTGGCTGTCACTCATTTCTGGCTCAGTCCTCGGCAGGCAATTGTATGCCCGGTGTCAGAGAAATCTTCAGAGTATGCATTGAGAGTTCGTGATCAGATTCATCAAGCTGGTTATTATGTTGATGTTGATACGTCAGACAGAAAGATTCAGAAGAAGGTCCGGGAGGCACAGCTAGCACAATACAACTATATTTTAGTGTTGGTGAAGAGGAAGCAAACTCTGGACAGGTAAGTGTTCCCGGATCCGAGATAAATCAACACATGAAGTAAGGAGTATGGATGAAC

Ace file of the UniGene sp_v3.0_unigene144902

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	threonyl-tRNA synthetase [Arabidopsis thaliana]	-	-	3.0e-21	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Threonine--tRNA ligase	-	-	7.91e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Threonine--tRNA ligase.	EC:6.1.1.3	-	9.18e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA biosynthesis	00970		9.18e-16	%

Source	Gene names
Sma3	At1g17960; At5g26830; CHLREDRAFT_167047; F2H15.18; F2P16.7; GSVIVT00028863001; GSVIVT00033369001; MICPUN_79308; OJ1212_C09.6; OJ1705_A03.38; Os08g0295300; OsI_28675; OsI_28676; OsJ_26793; PHYPADRAFT_227167; POPTRDRAFT_1085280; RCOM_0993540; T10F20.13; THR

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	threonine-tRNA ligase activity	GO:0004829	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	threonyl-tRNA aminoacylation	GO:0006435	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Threonyl-tRNA synthetase, class IIa	IPR002320	-	-
Sma3	TGS	IPR004095	-	-
Sma3	Anticodon-binding	IPR004154	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	Threonyl/alanyl tRNA synthetase, SAD	IPR012947	-	-
Sma3		IPR018158	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G18130.1	Class II aaRS and biotin synthetases superfamily protein chr1:6235895-6238799 FORWARD LENGTH=165	6.0e-26	72%
RefSeq	Arabidopsis thaliana	NP_173251.1	class II aaRS and biotin synthetase domain-containing protein [Arabidopsis thaliana]	8.0e-26	72%
RefSeq	Populus trichocarpa	XP_002311580.1	predicted protein [Populus trichocarpa]	4.0e-31	88%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACE7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 31 aas, putative chimeric sequence, your sequence is shorter than subject: 80 - 215

Fln protein: VVTLAVTHFWLSPRQAIVCPVSEKSSEYALRVRDQIHQAGYYVDVDTSDRKIQKKVREAQLAQYNYILVLVKRKQTLDR*

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTGGCTCAGTCCTCGGCAGGCAATTGTATGCCCGGTGTCAGAGAAATCTTCAGAGTATGCATTGAGAGTTCGTGATCAGATTCATCAAGCTGGTTATTATGTTGATGTTGATACGTCAGACAGAAAGATTCAGAAGAAGGTCCGGGAGGCACAGCTAGCACAATACAACTATATTTTAGTGTTGGTGAAGAGGAAGCAAACTCTGGACAGGTAA___GTGTTCCCGGATCCGAGATAAATCAACACATGAAGTAAGGAGTATGGATGAAC

Fln Alignment:

AllPine_a_rep_c115966___FWLSPRQAIVCPVSEKSSEYALRVRDQIHQAGYYVDVDTSDRKIQKKVREAQLAQYNYILVL
D5ACE7________________FWLSPRQAIVCPVSEKSSDYALRVRDQIHQAGYYVDVDTSDRKIQKKIREAQLAQYNYILVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain