SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144651

Length: 334 nt

UniGene Fasta

>sp_v3.0_unigene144651
CGTCGTGACCTTGGCTGTCACTCATATCTCTCTTGTCGATGGCTTCAATATCCCTCTCTCTGTAACTCCCTCAGACTCTTCGTGCAAAGTAATAGGTTGCACCACCGACATAAATGCGGTGTGCCCTGCAGAACTGAAAGTGACCGATGGATGCAAGAGTGCTTGTGCGGAGTTCAATACCCCTCAATACTGCTGTACCGGAGACTATGCAAACAACTGCTCTCCCACCAACTATTCCCAATTCTTCAAGGGGAAGTGCCCACAGGCATACAGCTATGCCAAGGACGATGCCACCAGCACCTTCACCTGCCCTTCTGGTGCTAATTACAACGTC

Ace file of the UniGene sp_v3.0_unigene144651

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein n=1 Tax=Pinus taeda RepID=A5HIY3_PINTA	-	-	97%
FL-Next	tr=Thaumatin-like protein; Pinus taeda (Loblolly pine).	-	-	97%
Sma3	Thaumatin-like protein	-	-	-

Source	Gene names
Sma3	5A1A.16; AT4g38660; At1g19320; At1g75030; At1g75040; At1g75050; At1g75800; At4g11650; At4g38660; CETLP; Cry j 3.1; Cry j 3.2; Cry j 3.3; Cry j 3.4; Cry j 3.5; Cry j 3.6; Cry j 3.7; Cry j 3.8; F20M13.220; F9E10.10; F9E10.11; F9E10.12; GSVIVT00000591001; GS

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	serine-type endopeptidase inhibitor activity	GO:0004867	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	IgE binding	GO:0019863	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	xenobiotic metabolic process	GO:0006805	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	regulation of anthocyanin biosynthetic process	GO:0031540	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	3(2),5 -bisphosphate nucleotidase HAL2	IPR006239	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G19320.1	Pathogenesis-related thaumatin superfamily protein chr1:6679327-6680178 FORWARD LENGTH=247	1.0e-38	55%
RefSeq	Arabidopsis thaliana	NP_173365.2	pathogenesis-related thaumatin-like protein [Arabidopsis thaliana]	1.0e-38	55%
RefSeq	Populus trichocarpa	XP_002330968.1	predicted protein [Populus trichocarpa]	5.0e-39	60%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A5HIY3

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 111 - 234

Fln protein: VVTLAVTHISLVDGFNIPLSVTPSDSSCKVIGCTTDINAVCPAELKVTDGCKSACAEFNTPQYCCTGDYANNCSPTNYSQFFKGKCPQAYSYAKDDATSTFTCPSGANYNV

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATCTCTCTTGTCGATGGCTTCAATATCCCTCTCTCTGTAACTCCCTCAGACTCTTCGTGCAAAGTAATAGGTTGCACCACCGACATAAATGCGGTGTGCCCTGCAGAACTGAAAGTGACCGATGGATGCAAGAGTGCTTGTGCGGAGTTCAATACCCCTCAATACTGCTGTACCGGAGACTATGCAAACAACTGCTCTCCCACCAACTATTCCCAATTCTTCAAGGGGAAGTGCCCACAGGCATACAGCTATGCCAAGGACGATGCCACCAGCACCTTCACCTGCCCTTCTGGTGCTAATTACAACGTC

Fln Alignment:

AllPine_a_rep_c115156___ISLVDGFNIPLSVTPSDSSCKVIGCTTDINAVCPAELKVTDGCKSACAEFNTPQYCCTGDYANNCSPTNYSQFFKGKCPQAYSYAKDDATSTFTCPSGANYNV
A5HIY3________________ISLVDGFNIPLSVTPSDSSCKVIGCTTDINAVCPAELKVTDGCKSACAEFNTPQYCCTGDYLNNCSPTNYSQFFKGQCPQAYSYAKDDATSTFTCPGGANYNV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain