SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144576

Length: 561 nt

UniGene Fasta

>sp_v3.0_unigene144576
ATGGGCGATGCACAATTCACTCCATTCCAGCCTCGGCTATTGAGGATGGGGGAAGTGCACCAACCCTTCAGAATTAACCCGTTCATTCGTGTGCTCTTTTTTGTCATCTTTTTCAAATGCTATGGAGAAAATTGTGGAGTTCAGTAGCTCCAGCTTAACAGAAGTTCCTGTGGGCAGTCAGAGTAAAGGTGGCCCCCTTATTTTGAGAAATAAATCCCCAAGATGGCATGAACAATTGCAGTCGTTGGTGCCTTAATTTCAAAGGGCGTGTTACAGTGGCATCTGTGAAAAACTTTCAACTTGTTGCGAATAAAGAACCTTCTCCACCAGTGACACAGAGTGATCCTGACAAGGTCATACTTCAGTTTGGGAAGATTGGAAAAGATATTTTCACCATGGATTATTGCTACCCACTCTCTGTATTTCAAGCTTTCGCCATATGTCTTAGCAGCTTTGATGCAAAATTGGCCTGTGAATGATGCACAGTAAAGTTTGGGTGCTTCATAAAAGAAATTGTAACACATCCCCTGCTTAGGAATTTTGAGGTGCAGGTTGCTGGAA

Ace file of the UniGene sp_v3.0_unigene144576

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubby-like F-box protein 14 n=3 Tax=Oryza sativa RepID=TLP14_ORYSJ	-	-	1.0e-36	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Tubby-like protein	-	-	3.28e-22	-

Source	Gene names
Sma3	AT2G18280; AT2G47900; At1g25280; At1g47270; At1g53320; At1g76900; At2g18280; At2g47900; At3g06380; At5g18680; B1131G08.31; CHLREDRAFT_17453; F12M16.22; F17A22.29; F22K20.1; F24P17.15; F4F7.13; F7O12.7; F8G22.1; GSVIVT00014597001; GSVIVT00019826001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubby, C-terminal	IPR000007	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Tubby, C-terminal, conserved site	IPR018066	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G25280.1	AtTLP10, TLP10 tubby like protein 10 chr1:8864961-8866608 FORWARD LENGTH=445	2.0e-35	69%
RefSeq	Arabidopsis thaliana	NP_173899.1	tubby-like F-box protein 10 [Arabidopsis thaliana]	2.0e-35	69%
RefSeq	Populus trichocarpa	XP_002327688.1	f-box family protein [Populus trichocarpa]	9.99995e-41	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUX5

Fln msg: your sequence is shorter than subject: 159 - 418

Fln protein: GRCTIHSIPASAIEDGGSAPTLQN*PVHSCALFCHLFQMLWRKLWSSVAPA*QKFLWAVRVKVAPLF*EINPQDGMNNCSRWCLNFKGRVTVASVKNFQLVANKEPSPPVTQSDPDKVILQFGKIGKDIFTMDYCYPLSVFQAFAICLSSFDAKLACE*

Protein Length: 160

Fln nts: ATGGGCGATGCACAATTCACTCCATTCCAGCCTCGGCTATTGAGGATGGGGGAAGTGCACCAACCCTTCAGAATTAACCCGTTCATTCGTGTGCTCTTTTTTGTCATCTTTTTCAAATGCTATGGAGAAAATTGTGGAGTTCAGTAGCTCCAGCTTAACAGAAGTTCCTGTGGGCAGTCAGAGTAAAGGTGGCCCCCTTATTTTGAGAAATAAATCCCCAAGATGGCATGAACAATTGCAGTCGTTGGTGCCTTAATTTCAAAGGGCGTGTTACAGTGGCATCTGTGAAAAACTTTCAACTTGTTGCGAATAAAGAACCTTCTCCACCAGTGACACAGAGTGATCCTGACAAGGTCATACTTCAGTTTGGGAAGATTGGAAAAGATATTTTCACCATGGATTATTGCTACCCACTCTCTGTATTTCAAGCTTTCGCCATATGTCTTAGCAGCTTTGATGCAAAATTGGCCTGTGAATGA___TGCACAGTAAAGTTTGGGTGCTTCATAAAAGAAATTGTAACACATCCCCTGCTTAGGAATTTTGAGGTGCAGGTTGCTGGAA

Fln Alignment:

AllPine_a_rep_c114899___RCTIHSIPASAIEDGGSAPTLQN*PVHSCALFCHLFQMLWRKLWSSVAPA*QKFLWAVRVKVAPLF*EINPQDGMNNCSRWCLNFKGRVTVASVKNFQLVANKEPSPPVTQSDPDKVILQFGKIGKDIFTMDYCYPLSVFQAFAICLSSFDAKLACE
A9NUX5________________QCIMHSIPASAVQPGGSAPTPVEPSITSLDHSLASCPTFGSKSCILESPSISEPLTNSNSKDEPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAPEPNPSVSQNDYDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
98		33		66	0.997476
99	33		33	33	0.997748
100			33	66	0.997456
101		33	33	33	0.997747
102		33	33	33	0.997748
103		33	66		0.997453
110		33		66	0.997458
111	33			66	0.997461
138	66		33		0.997461
210	66		33		0.997476
224		20		80	0.995498
226			80	20	0.995497
228	80		20		0.995497
236	75	25			0.996473
237	75			25	0.996473
239			25	75	0.996473
244	75			25	0.996473
248	20		80		0.995505
249		25		75	0.996473
251		25	75		0.996473
252	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain