SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144489

Length: 516 nt

UniGene Fasta

>sp_v3.0_unigene144489
GAAGATGGAGGTGGGTTCTCTGGTGTGACTTGGTTGTGGCTGGAGAGGATGTGGCTTTGGATCAGATTCCAATAACACGGATGCGTACTACAAGAAAATGCTGCAGGCAGATCCTGGCAACCCACTTTTATTGACAAACTACGGGAGATTCCTGCAGGAGGTCCAGCATGATCTGGAAAGAGCTGAAGAATATTATGGGAGGGCCATCCTAGCCAGTCCCTGTGACGGAGATATCCTCTCTGTTTATGCCAATCTCATATGGGATGTTCACAAAGATGCACCTCGTGCCAAATCCTATTTTGATCAAGCTGTTGAAGCTGCTCCAGAAGACTGCAATGTTCTTGGATTATATGCCCATTTCCTATGGAATGCAAAGGATGATGAAGAAGATCAGGCTGCTTCTCAGCAGCAGAAAATGGTACCGCCAACGTATTTTGGTACTGCGACTACTGCAGCTTATGCAACTACCTGATATCGTTTCTCGTTTCTCGTTATCAGGGTGCTTCTCATCAGCAG

Ace file of the UniGene sp_v3.0_unigene144489

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	AT4g17940; AT4g32340; At1g04530; At1g80130; At4g17940; At4g32340; At5g20190; F10M6.30; F18B13.21; F8B4.40; GSVIVT00000340001; GSVIVT00015736001; GSVIVT00016915001; GSVIVT00020351001; H0306B06.7; LOC_Os10g42610; OSIGBa0092E01.3; OSIGBa0157K09-H0214G12.11;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:6814093-6815171 FORWARD LENGTH=290	6.0e-39	54%
RefSeq	Arabidopsis thaliana	NP_197519.1	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	7.0e-39	54%
RefSeq	Populus trichocarpa	XP_002308981.1	predicted protein [Populus trichocarpa]	3.00018e-42	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR76

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 157 - 387

Fln protein: KMEVGSLV*LGCGWRGCGFGSDSNNTDAYYKKMLQADPGNPLLLTNYGRFLQEVQHDLERAEEYYGRAILASPCDGDILSVYANLIWDVHKDAPRAKSYFDQAVEAAPEDCNVLGLYAHFLWNAKDDEEDQAASQQQKMVPPTYFGTATTAAYATT*

Protein Length: 158

Fln nts: GAAGATGGAGGTGGGTTCTCTGGTGTGACTTGGTTGTGGCTGGAGAGGATGTGGCTTTGGATCAGATTCCAATAACACGGATGCGTACTACAAGAAAATGCTGCAGGCAGATCCTGGCAACCCACTTTTATTGACAAACTACGGGAGATTCCTGCAGGAGGTCCAGCATGATCTGGAAAGAGCTGAAGAATATTATGGGAGGGCCATCCTAGCCAGTCCCTGTGACGGAGATATCCTCTCTGTTTATGCCAATCTCATATGGGATGTTCACAAAGATGCACCTCGTGCCAAATCCTATTTTGATCAAGCTGTTGAAGCTGCTCCAGAAGACTGCAATGTTCTTGGATTATATGCCCATTTCCTATGGAATGCAAAGGATGATGAAGAAGATCAGGCTGCTTCTCAGCAGCAGAAAATGGTACCGCCAACGTATTTTGGTACTGCGACTACTGCAGCTTATGCAACTACCTGA___TATCGTTTCTCGTTTCTCGTTATCAGGGTGCTTCTCATCAGCAG

Fln Alignment:

AllPine_a_rep_c114543___SDSNNTDAYYKKMLQADPGNPLLLTNYGRFLQEVQHDLERAEEYYGRAILASPCDGDILSVYANLIWDVHKDAPRAKSYFDQAVEAAPEDCNVLGLYAHFLWN
B8LR76________________NSKSSTDMYYQSMLEANPGNPLLLSNYAKFLHEVQHDMAKAEEYYGRAILASPGDAEVLSLYAKFTWETQNDGARAESYFDRAVKAAPDDCYVLSSYAHFLWN

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
142			33	66	0.997459
143	66			33	0.997458
146			66	33	0.997458
149		33	66		0.997457
150	66	33			0.997457
176		37		62	1.0
178			62	37	1.0
179	62	37			1.0
180	62		37		1.0
181	62			37	1.0
184		37	62		1.0
185		87		12	0.992555
190	57	14	28		1.0
191	57	28		14	1.0
192			71	28	1.0
193	57		28	14	1.0
194	57	14		28	1.0
195	14	28		57	1.0
196	85	14			0.993533
197		25		75	1.0
198		14		85	0.993533
199	75	25			1.0
200	25			75	1.0
225	28			71	1.0
230		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain