SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144398

Length: 254 nt

UniGene Fasta

>sp_v3.0_unigene144398
CGTCGTGACCTTGGCTGTCACTCAATCTTTCTTTGAAACACTTTGGACACCTTATCTGTCCGCCCTTTCCCTCTATCCATGAATTGCTCTATCAACCTTCTGGATCCCAAATCATTACCGATTCTCCACCTCTTATCATTCAGGTCACGCGTTTGAAATGTGGAGGCTTCATATTCGCTTTGAGGTTCAATCACTGCATGAGTGACCGCATTGGAATCCTCCAGTTCTTGAAAGCCCTCGCTGAAATGGCGAGA

Ace file of the UniGene sp_v3.0_unigene144398

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02458, Transferase, Transferase family	-	-	2.0e-14	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Benzoyl coenzyme A: benzyl alcohol benzoyl transferase	-	-	2.315e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	10-deacetylbaccatin III 10-O-acetyltransferase.	EC:2.3.1.167	-	3.8e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Diterpenoid biosynthesis	00904	3.8e-08	%
Sma3	Biosynthesis of terpenoids and steroids	01062	3.8e-08	%
Sma3	Metabolic pathways	01100	3.8e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	3.8e-08	%

Source	Gene names
Sma3	AAT1; AAT3; At3g03480; CtAT23; GSVIVT00001204001; GSVIVT00003212001; GSVIVT00003215001; GSVIVT00003217001; GSVIVT00003220001; GSVIVT00009436001; GSVIVT00013875001; GSVIVT00022386001; HMT/HLTase; POPTRDRAFT_571373; POPTRDRAFT_571376; POPTRDRAFT_642501; POP

Source	GOs	Term	Type	Identity
Sma3		GO:0008415	Molecular Function	-
Sma3	acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity	GO:0010327	Molecular Function	-
Sma3	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	-
Sma3	green leaf volatile biosynthetic process	GO:0010597	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transferase	IPR003480	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G03480.1	CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase chr3:828400-829863 REVERSE LENGTH=454	5.0e-19	56%
RefSeq	Arabidopsis thaliana	NP_186998.1	acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase [Arabidopsis thaliana]	6.0e-19	56%
RefSeq	Populus trichocarpa	XP_002325454.1	predicted protein [Populus trichocarpa]	1.0e-23	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLR5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 267 aas, your sequence is shorter than subject: 84 - 448

Fln protein: S*PWLSLNLSLKHFGHLICPPFPSIHELLYQPSGSQIITDSPPLIIQVTRLKCGGFIFALRFNHCMSDRIGILQFLKALAEMAR

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTTCTTTGAAACACTTTGGACACCTTATCTGTCCGCCCTTTCCCTCTATCCATGAATTGCTCTATCAACCTTCTGGATCCCAAATCATTACCGATTCTCCACCTCTTATCATTCAGGTCACGCGTTTGAAATGTGGAGGCTTCATATTCGCTTTGAGGTTCAATCACTGCATGAGTGACCGCATTGGAATCCTCCAGTTCTTGAAAGCCCTCGCTGAAATGGCGAGA

Fln Alignment:

AllPine_a_rep_c114275___NLSLKHFGHLICPPFPSIHELLYQPSGSQIITDSPPLIIQVTRLKCGGFIFALRFNHCMSDRIGILQFLKALAEMAR
B8LLR5________________DVALEEFGDLQ-PPFPCWEDLLHDVPASLTLTNSPLLLIQVTRLRCGGFIFALRLNHSMCDAVGLVQFMNALGEMAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain