SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144376

Length: 298 nt

UniGene Fasta

>sp_v3.0_unigene144376
CGTCGTGACCTTGGCTGTCACTCAACTAATATCTTCGTCGTGGCCTTGGCTGTGATCACAATTCTATTTGTGGTTCGACCCAACTCTGGATTTCCACACTTACTCTGTGCTCTGGACACCAAACCAAATCATATTATCTGTAGATGGGACTCCTGTTCGAGTGTTCAAGACAGGGAGAAAGAGCTGGGTAACAATTTTCATTTTCCGAATAGCCAGGCAATGAGGATATACTCCAGCCTTTGGAATGCAGATGACTGGGCAACCAGAGGTGGGCTCATCAAGAGCGACTGGAGTAAAG

Ace file of the UniGene sp_v3.0_unigene144376

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	1.0e-25	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Xyloglucan endotransglycosylase	-	-	5.004e-32	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	1.076e-38	-

Source	Gene names
Sma3	At4g25810; At4g30270; At5g13870; At5g57530; At5g57540; EXGT-A4; EXT; F14M19.90; GSVIVT00003361001; GSVIVT00003461001; GSVIVT00003480001; GSVIVT00006236001; GSVIVT00007248001; GSVIVT00031395001; GSVIVT00031397001; GSVIVT00031398001; GSVIVT00031399001; GSVI

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25810.1	XTR6, XTH23 xyloglucan endotransglycosylase 6 chr4:13128694-13129715 FORWARD LENGTH=286	4.0e-25	75%
RefSeq	Arabidopsis thaliana	NP_194311.1	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	5.0e-25	75%
RefSeq	Populus trichocarpa	XP_002318936.1	predicted protein [Populus trichocarpa]	2.0e-27	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQJ9

Fln msg: Overlapping hits, possible frame ERROR between 181 and 172, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 60 aas, your sequence is shorter than subject: 99 - 275

Fln protein: VVTLAVTQLISSSWPWL*SQFYLWFDPTLDFHTYSVLWTPNQIILSVDGTPVRVFKxxxxxLGNNFHFPNSQAMRIYSSLWNADDWATRGGLIKSDWSK

Protein Length: 100

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTAATATCTTCGTCGTGGCCTTGGCTGTGATCACAATTCTATTTGTGGTTCGACCCAACTCTGGATTTCCACACTTACTCTGTGCTCTGGACACCAAACCAAATCATATTATCTGTAGATGGGACTCCTGTTCGAGTGTTCAAGxxxxxxxxxxxxxxxCTGGGTAACAATTTTCATTTTCCGAATAGCCAGGCAATGAGGATATACTCCAGCCTTTGGAATGCAGATGACTGGGCAACCAGAGGTGGGCTCATCAAGAGCGACTGGAGTAAAG

Fln Alignment:

AllPine_a_rep_c114216___QFYLWFDPTLDFHTYSVLWTPNQIILSVDGTPVRVFKTxxxELG---NNFHFPNSQAMRIYSSLWNADDWATRGGLIKSDWSK
A9NQJ9________________QFYLWFDPTLDFHTYSVLWTSNQIIFSVDGTPVRVFKKxxxELGEVDNNYHYPKSQAMRIYSSLWNADDWATRGGLVKTDWSK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain