SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144319

Length: 372 nt

UniGene Fasta

>sp_v3.0_unigene144319
CAAAAGGATGAAGTTGCTTAGGTTAGTTAGGTTTCCAGTAGCCTTTGTGGTGAGATCAAATGGATTTGATCTACACAGAAGATGAAATCAAGCAATTTGTGGCTAAACAGGTGGTGTTCTACAAGAAGCTGCATAAGGTGTATTTCATCCACGCAATTCCCAAGTCTCCTGCTGGAAAAATACTGCGAAAGGATTTGAGGGGGAAGCTCTCTGCCCCCACCTCCACCGTTGAAATCAAAGCATGATATTCTTTTCTCTAATCGATTTTATCACTTCAACAAGAATTTGTGGGCATGCCATAGACGCATGACGGCGGCCAATAACAATAATGTCACCGCTTTCTGGGCTTCTTTCTGGAGATATATTTATGGA

Ace file of the UniGene sp_v3.0_unigene144319

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9S209_RICCO	-	-	1.0e-17	73%
FL-Next	tr=4-coumarate:CoA ligase; Pinus massoniana.	-	-	0.0	76%

Source	ECs	Term	Type	e value	Identity
Sma3	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	4.846e-06	-
Sma3	4-coumarate--CoA ligase.	EC:6.2.1.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	%
Sma3	Phenylalanine metabolism	00360	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	4CL; 4CL-1; 4CL-2; 4CL.2; 4CL1; 4CL2; 4CL3; 4CL4; 4CL5; 4cl; At1g51680; At1g65060; At3g21240; Egl4CL; F16G16.6; F19C24.11; GSVIVT00014031001; GSVIVT00031383001; GSVIVT00031385001; Gm4CL-3; Ib4CL; LOC_Os02g08100; LOC_Os02g46970; LOC_Os06g44620; LOC_Os08g34

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phenylpropanoid metabolic process	GO:0009698	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G65060.1	4CL3 4-coumarate:CoA ligase 3 chr1:24167385-24171457 REVERSE LENGTH=561	2.0e-16	71%
RefSeq	Arabidopsis thaliana	NP_176686.1	4-coumarate--CoA ligase 3 [Arabidopsis thaliana]	2.0e-16	71%
RefSeq	Populus trichocarpa	XP_002325815.1	4-Coumarate:CoA ligase [Populus trichocarpa]	8.0e-18	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C1KBY2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 81 - 537

Fln protein: KG*SCLG*LGFQ*PLW*DQMDLIYTEDEIKQFVAKQVVFYKKLHKVYFIHAIPKSPAGKILRKDLRGKLSAPTSTVEIKA*

Protein Length: 82

Fln nts: CAAAAGGATGAAGTTGCTTAGGTTAGTTAGGTTTCCAGTAGCCTTTGTGGTGAGATCAAATGGATTTGATCTACACAGAAGATGAAATCAAGCAATTTGTGGCTAAACAGGTGGTGTTCTACAAGAAGCTGCATAAGGTGTATTTCATCCACGCAATTCCCAAGTCTCCTGCTGGAAAAATACTGCGAAAGGATTTGAGGGGGAAGCTCTCTGCCCCCACCTCCACCGTTGAAATCAAAGCATGA___TATTCTTTTCTCTAATCGATTTTATCACTTCAACAAGAATTTGTGGGCATGCCATAGACGCATGACGGCGGCCAATAACAATAATGTCACCGCTTTCTGGGCTTCTTTCTGGAGATATATTTATGGA

Fln Alignment:

AllPine_a_rep_c114054___TEDEIKQFVAKQVVFYKKLHKVYFIHAIPKSPAGKILRKDLRGKLSA
C1KBY2________________SEQEIKEFVAKQVVFYKKIHRVYFVDAIPKSPSGKILRKDLRSRLAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain