SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144221

Length: 1077 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene144221 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pleiotropic drug resistance protein 1 n=2 Tax=Nicotiana tabacum RepID=PDR1_TOBAC	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Sma3	ATP-binding cassette transporter, putative	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	5.60519e-45	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	1.503e-10	-

Source	Gene names
Sma3	ABC1; ABC2; ABC3; ABC4; At1g15210; At1g15520; At1g59870; At1g66950; At2g26910; At2g29940; At2g36380; At2g37280; At3g16340; At3g30842; At3g53480; At4g15215; At4g15220/At4g15230; At4g15233; At4g15236; B1045F02.15; B1090H08.39; CHLREDRAFT_103211; CHLREDRAFT_

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G16340.1	ATPDR1, PDR1 pleiotropic drug resistance 1 chr3:5539897-5546263 FORWARD LENGTH=1416	78%
RefSeq	Arabidopsis thaliana	NP_566543.1	ABC transporter G family member 29 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002298123.1	pleiotropic drug resistance, ABC transporter family protein, partial [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPF4

Fln msg: your sequence is shorter than subject: 249 - 283

Fln protein: GYVEGNINISGFPKKQETFARISGYCEQNDIHSPNVTVFESLTYSAWLRLPCEVDEKTRMIFVAEVMELVELFPLRDALVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQIIYAGPLGHHSHKLIEYFEAVPEIPQIIEGYNPATWALEVSSIAVEERLGVDFVEIYRKSALYEWNQALIKELSTLLPACRI*

Protein Length: 250

Fln nts: GGGCTATGTAGAAGGGAATATAAACATCTCTGGATTCCCCAAGAAGCAAGAAACATTTGCTCGCATTTCAGGATACTGTGAACAAAATGACATCCACTCTCCAAATGTCACAGTCTTTGAATCACTCACGTATTCTGCATGGCTCCGTCTTCCTTGCGAGGTTGATGAGAAAACTAGAATGATTTTTGTTGCAGAAGTCATGGAGCTTGTGGAGCTATTTCCTTTGAGAGATGCTCTTGTAGGGCTGCCTGGAGTGACAGGTCTTTCTACAGAGCAAAGGAAGAGACTTACCATAGCAGTAGAACTAGTTGCCAATCCTTCTATAATCTTCATGGATGAGCCAACTTCCGGACTAGATGCCCGTGCTGCAGCAATAGTTATGCGTACTGTTCGCAACACAGTCAATACAGGTCGAACAGTTGTTTGTACCATCCACCAACCCAGCATTGATATCTTCGAAGCTTTTGATGAGCTCTTGCTCCTGAAAAGGGGTGGCCAAATCATCTACGCAGGTCCTTTGGGTCATCATTCTCATAAACTCATCGAGTATTTTGAGGCCGTTCCAGAAATACCGCAGATTATAGAAGGATACAATCCAGCGACATGGGCACTAGAAGTAAGTTCCATAGCTGTTGAGGAAAGGCTTGGTGTGGACTTCGTTGAAATCTACAGAAAATCAGCACTTTATGAATGGAATCAAGCTCTTATTAAAGAGCTAAGCACCCTGCTCCCGGCTTGCAGGATTTGA___ATTTTCCAACACAGTATGCACAGTCCTTCAAAGTTCAGTGCGTGGCATGCCTTTGGAAGCAACATTGGTCATATTGGAGGAATCCACACTATAATGTTGTGCGGTTTTTCTTCACTACAGTGGTTGCCCTACTGTTTGGAACCATATTTTGGGACCTTGGAACGAAGAGAGGAAAACAACAAGACCTAATGAATATTATGGGATCAATGTACTGTGCTGTACTTTTTCTGGGTGTTAGCAATTCATCGAGTGTCCAGCCAGTTGTCGAGGTTGAACGAACTGTCTTTTACAGAGAAAAAGCTGCTGGGATGTATTCAGCAGTCCCTTAT

Fln Alignment:

AllPine_a_rep_c113667___GYVEGNINISGFPKKQETFARISGYCEQNDIHSPNVTVFESLTYSAWLRLPCEVDEKTRMIFVAEVMELVELFPLRDALVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIXXXXXXXXXXXXXXXXXTIHQPSIDIFEAFDELLLLKRGGQIIYAGPLGHHSHKLIEYFEAVPEIPQIIEGYNPATWALEVSSIAVEERLGVDFVEIYRKSALY
B8LPF4________________GHIEGDIRISGFPKVQETFAQISGYCEQNDIHSPQVTVHESLLFSAWLRLAPEIDSTTKKHFVSEVMQLLELDDLKDVVVGIPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNIVDTGRTVVCTIHQPSVDIFEAFDELLLMKQGGQIIYAGPLGHHSKNVIEYFEAIPGVPKIEDKHNPATWILEVTSMAAEQRLSIDFAQIYKESTLF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
630		50		50	1.0
775	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain