SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144220

Length: 837 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene144220

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA	-	-	88%
FL-Next	tr=Sucrose synthase; Pinus taeda (Loblolly pine).	-	-	95%
Sma3	Sucrose synthase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sucrose synthase.	EC:2.4.1.13	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	At1g73370; At3g43190; At4g02280; At5g20830; At5g49190; B1056G08.118; BoSS; CSS1; CitSS2; CitSUS1; CitSUS1-2; CitSUSA; CitSUSA-2; F7K15_40; FaSS; GSVIVT00000882001; GSVIVT00001299001; GSVIVT00003157001; GSVIVT00016378001; GSVIVT00023450001; GSVIVT000261160

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sucrose synthase activity	GO:0016157	Molecular Function	-
Sma3	sucrose-phosphate synthase activity	GO:0046524	Molecular Function	-
Sma3	response to hypoxia	GO:0001666	Biological Process	-
Sma3	sucrose metabolic process	GO:0005985	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to flooding	GO:0009413	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Sucrose synthase, plant/cyanobacteria	IPR012820	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G49190.1	SUS2, SSA, ATSUS2 sucrose synthase 2 chr5:19943369-19947189 REVERSE LENGTH=807	73%
RefSeq	Arabidopsis thaliana	NP_199730.1	sucrose synthase 2 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002302727.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A6N837

Fln msg: Separated hits, possible frame ERROR between 72 and 92, Unexpected STOP codon at 3' end. Distance to subject end: 347 aas, your sequence is shorter than subject: 264 - 833

Fln protein: MGDFLRAHNYRGQKLMLNERIQSxxxxxxxxGIGERMGRQCRACLDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSPHGYFGQANVLGMPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFKTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYPDSDIYWKNFEENTISLVSLL*I*

Protein Length: 265

Fln nts: ATGGGGGATTTCCTAAGAGCACACAACTACCGAGGCCAGAAGCTGATGCTGAATGAGAGGATACAGAGTTTxxxxxxxxxxxxxxxxxxxxxTGGGATTGGAGAAAGGATGGGGAGACAATGCAGAGCATGTCTTGATACGATTCATTTGCTTTTGGAGATCCTTCAGGCACCTGATCCATCGAATTTAGAAACGTTTCTAGGAAGGGTTCCTATGGTCTTTAATGTTGTGATTCTTTCACCTCATGGTTATTTTGGCCAAGCAAATGTTTTAGGAATGCCTGACACTGGTGGACAGGTTGTGTATATACTTGATCAAGTGCGTGCCTTGGAGAATGAAATGCTATTGAGAATAAAACAACAAGGATTGGACATTACGCCTGAGATTATTGTGGTGACTCGGCTGATTCCTGAGGCTCACGGGACAACATGCAATCAACGACTTGAAAAAATTAGTGGAACACAACATTCACGGATTCTACGGGTGCCCTTCAAAACAGAAAAAGGAGTTGTGCGCGACTGGGTTTCTCGATTTGATGTGTGGCCTTACTTGGAAAGATTTTCGGAGGATGTAACAAATGAAATAGCCGTGGAGCTGAAAGGTCAACCTGATCTGATTATTGGCAATTACAGTGATGGAAATTTAGTGGCATCTTTGATGGCACATAAACAAGGAATCACTCAGTGCAACATAGCTCATGCTTTGGAGAAGACCAAATACCCAGATTCAGACATATATTGGAAGAATTTTGAAGAAAATACCATTTCTCTTGTCAGTTTACTGTAGATCTAATCGCAATGAACCATGCAGATTTCATTATCACTAGCACATATCAAGAG

Fln Alignment:

AllPine_a_rep_c113664___DFLRAHNYRGQKLMLNERIQSLxxxxxxxGIGERMGRQCRACLDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSPHGYFGQANVLGMPD--TGGQVVYILDQVRALENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFKTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYPDSDIYWKNFEE
A6N837________________DFLRAHKYRGQKLMLNERIQSLxxxxxxxGLEKGWGENAEHALDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSPHGYFGQANVLGMPDHPVDRLCIYLIN-VAPLENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFRTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYPDSDIYWKNFEE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain