SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144204

Length: 569 nt

UniGene Fasta

>sp_v3.0_unigene144204
TTTTCTCTAGCGCATGAAATAATAAAATACCGATAATATGTGGAAATGGGGATAGCAGGTCAAAGCTATAGTCTTTGACCTGGCTGGCATACGCAAACCCTAGTCTTGGTATACTGGGTTTCATCTCGCTTCCATCGCCGTTTATGTTCTTTCGTTCCTCCTCTTCCCTCTCGGTTTTAGGTATAGGGTTGCGGCGGTGCGGTCCGATCTGCAGGGTTTCTGGTCGATTCTGAAACAATGGGTATCTCACGGGATTCACTTCACAAGAAACGTGCGACTGGAGGGAAGAAGAAGGTGTGGAGGAAGAAGCGAAAGTATGAGTTGGGCAGACAGCCTTCAATGACGAAACTGTCGAGTAACAAGACCGTGAGAAGGGTGCGTGTGAGAGGAGGTAATGTGAAGTGGAGGGCTTTGAGACTTGATACTGGTAACTTTTCTTGGGGTTCTGAGGCTGTGACTCGCAAGACTCGTATATTAGATGTGGTTTACAATGCGTCTAATAACGAGCTTGTCAGGACCCAGACTTTGGTAAAGAGTGCCATCATTCAGGTTGATGCTGCTCCTTTCGT

Ace file of the UniGene sp_v3.0_unigene144204

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI	-	-	2.0e-40	80%
FL-Next	sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	99%
Sma3	Ribosomal protein S8	-	-	0.0	-

Source	Gene names
Sma3	57h21.8; At5g20290; At5g59240; CHLREDRAFT_195605; F5O24_180; GSVIVT00003491001; GSVIVT00012482001; GSVIVT00027218001; MICPUCDRAFT_34143; MICPUN_95694; OSJNBa0038P21.4; OSTLU_29541; Os02g0489400; Os04g0349500; OsI_07259; OsI_15456; OsJ_06781; OsJ_14370; Ot

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8e	IPR001047	-	0.0	-
Sma3	Ribosomal protein S8e, conserved site	IPR018283	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G59240.1	Ribosomal protein S8e family protein chr5:23902626-23903670 REVERSE LENGTH=210	91%
RefSeq	Arabidopsis thaliana	NP_200732.2	40S ribosomal protein S8-2 [Arabidopsis thaliana]	91%
RefSeq	Populus trichocarpa	XP_002298850.1	predicted protein [Populus trichocarpa]	92%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMS2

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 110 - 221

Fln protein: MGISRDSLHKKRATGGKKKVWRKKRKYELGRQPSMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPF

Protein Length: 111

Fln nts: TTTTCTCTAGCGCATGAAATAATAAAATACCGATAATATGTGGAAATGGGGATAGCAGGTCAAAGCTATAGTCTTTGACCTGGCTGGCATACGCAAACCCTAGTCTTGGTATACTGGGTTTCATCTCGCTTCCATCGCCGTTTATGTTCTTTCGTTCCTCCTCTTCCCTCTCGGTTTTAGGTATAGGGTTGCGGCGGTGCGGTCCGATCTGCAGGGTTTCTGGTCGATTCTGAAACA_-_ATGGGTATCTCACGGGATTCACTTCACAAGAAACGTGCGACTGGAGGGAAGAAGAAGGTGTGGAGGAAGAAGCGAAAGTATGAGTTGGGCAGACAGCCTTCAATGACGAAACTGTCGAGTAACAAGACCGTGAGAAGGGTGCGTGTGAGAGGAGGTAATGTGAAGTGGAGGGCTTTGAGACTTGATACTGGTAACTTTTCTTGGGGTTCTGAGGCTGTGACTCGCAAGACTCGTATATTAGATGTGGTTTACAATGCGTCTAATAACGAGCTTGTCAGGACCCAGACTTTGGTAAAGAGTGCCATCATTCAGGTTGATGCTGCTCCTTTCGT

Fln Alignment:

AllPine_a_rep_c113608___MGISRDSLHKKRATGGXXXXXXXXXXYELGRQPSMTKLSSNKTXXXXXXXXXXXKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPF
A9NMS2________________MGISRDSLHKKRATGGKKKVWRKKRKYELGRQPSMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
102			14	85	0.993533
128		12		87	0.992554
323	87		12		0.992554
480	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain