SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144197

Length: 454 nt

UniGene Fasta

>sp_v3.0_unigene144197
CGGTATTGAAGGACGGGGAGCAGCTTTCTCAAGCGACGGCCATTGTGATAGTGTTGATGGTGTGCGTTTTCGTGTCAGCATTTGCATGGTCATGGGGACCTCTCGGATGGTTGATTCCCAGCGAAACGTTTCCCCTGGAAACAAGATCCGCTGGACAGAGCGTGACGGTGTGCGTGAATCTACTCTTCACATTTGGTGTTGCACAGGCGTTTCTGTCAATGCTTTGCAATTTCAAATACGGCATCTTCTTCTTCTTTGCTGGTTGGGTCTTCATTATGTCCCTCTTTGTGCTGTTTCTCCTTCCGGAGACGAAGAATGTGCCGATCGAAGAAATGATGGACAGAGTGTGGAAAAAGCATTGGTTGTGGAAAAGTTTTGTGACAGATGCCGACCTCATTGATGATGACGAGATGTCAATTCCAAACAAGAAAATGGAAGAGCCGGTGGCCACACC

Ace file of the UniGene sp_v3.0_unigene144197

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hexose transporter protein n=2 Tax=Solanum lycopersicum RepID=O82000_SOLLC	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Sugar transporter, putative	-	-	7.447e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	7.363e-22	-

Source	Gene names
Sma3	AGAA.1; At1g07340; At1g11260; At1g34580; At1g50310; At1g77210; At3g05960; At3g19930; At3g19940; At4g02050; At4g21480; At5g23270; At5g26250; At5g26340; At5g61520; B1008E06.22-1; B1103G11.41; B1317D11.119-1; B1317D11.119-2; F12K21.8; F14I3.9; F18E5.100; F22

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	high-affinity hydrogen:glucose symporter activity	GO:0005358	Molecular Function	-
Sma3	sucrose:hydrogen symporter activity	GO:0008506	Molecular Function	-
Sma3	monosaccharide transmembrane transporter activity	GO:0015145	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	monosaccharide transport	GO:0015749	Biological Process	-
Sma3	sucrose transport	GO:0015770	Biological Process	-
Sma3	carbohydrate transmembrane transport	GO:0034219	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G26340.1	MSS1, STP13, ATSTP13 Major facilitator superfamily protein chr5:9243851-9246994 REVERSE LENGTH=526	76%
RefSeq	Arabidopsis thaliana	NP_198006.1	sugar transport protein 13 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002312523.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLP1

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 150 - 529

Fln protein: VLKDGEQLSQATAIVIVLMVCVFVSAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFGVAQAFLSMLCNFKYGIFFFFAGWVFIMSLFVLFLLPETKNVPIEEMMDRVWKKHWLWKSFVTDADLIDDDEMSIPNKKMEEPVAT

Protein Length: 151

Fln nts: CGGTATTGAAGGACGGGGAGCAGCTTTCTCAAGCGACGGCCATTGTGATAGTGTTGATGGTGTGCGTTTTCGTGTCAGCATTTGCATGGTCATGGGGACCTCTCGGATGGTTGATTCCCAGCGAAACGTTTCCCCTGGAAACAAGATCCGCTGGACAGAGCGTGACGGTGTGCGTGAATCTACTCTTCACATTTGGTGTTGCACAGGCGTTTCTGTCAATGCTTTGCAATTTCAAATACGGCATCTTCTTCTTCTTTGCTGGTTGGGTCTTCATTATGTCCCTCTTTGTGCTGTTTCTCCTTCCGGAGACGAAGAATGTGCCGATCGAAGAAATGATGGACAGAGTGTGGAAAAAGCATTGGTTGTGGAAAAGTTTTGTGACAGATGCCGACCTCATTGATGATGACGAGATGTCAATTCCAAACAAGAAAATGGAAGAGCCGGTGGCCACACC

Fln Alignment:

AllPine_a_rep_c113576___LKDGEQLSQATAIVIVLMVCVFVSAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFGVAQAFLSMLCNFKYGIFFFFAGWVFIMSLFVLFLLPETKNVPIEEMMDRVWKKHWLWKSFVTDADLIDDDEMSIPNKK
B8LLP1________________LKDGEDLPHATAIIIVLLVCVFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFAIAQAFLSMLCHLKYGIFLFFASWVLVMSVFVLFLLPETKNIPIEEMMERVWRKHWLWKRFVTDADLMDDDDEDVYSKQ

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
163	90	10			0.903101
172		10	90		0.903076
173			90	10	0.903076
182		11	88		0.923564
184	88	11			0.923564
188	55		22	22	0.999999
189		90		10	0.903297
191		80		20	0.999996
220		62		37	1.0
268		66		33	1.0
278		66	33		1.0
291		75		25	0.996477
302		33	66		0.997452
315	33		66		0.997452
332			66	33	0.997452
336	25		75		0.99649
344			66	33	0.997452
346			25	75	0.996475

SSRs (tot: 1)

Start position	End position	Sequence	Length
244	256	TCT TCT TCT TCT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain