SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144188

Length: 948 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene144188

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome subunit RPN2b [Arabidopsis thaliana]	-	-	9.0e-31	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	26S proteasome regulatory subunit	-	-	2.127e-09	-

Source	Gene names
Sma3	At1g04810; At2g32730; B0402A04.3; CHLREDRAFT_192526; F13M7.20; GSVIVT00009324001; GSVIVT00031868001; GSVIVT00035526001; MICPUCDRAFT_30827; MICPUN_60141; OSJNBa0060N03.12; OSTLU_39213; Os04g0608500; Os08g0224700; OsI_17319; OsI_28284; OsJ_16095; OsJ_26464;

Source	GOs	Term	Type	Identity
Sma3	proteasome complex	GO:0000502	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	regulation of protein catabolic process	GO:0042176	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit	IPR016642	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04810.1	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit chr1:1350304-1355261 FORWARD LENGTH=1001	2.0e-35	73%
RefSeq	Arabidopsis thaliana	NP_171973.1	26S proteasome regulatory subunit N2 [Arabidopsis thaliana]	3.0e-35	73%
RefSeq	Populus trichocarpa	XP_002300175.1	predicted protein [Populus trichocarpa]	7.0e-36	74%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQS7

Fln msg: Warning!, your query overlaps and the subject is separated, query STOP codon too far from subject stop. Distance to subject end: 40 aas, putative chimeric sequence, your sequence is shorter than subject: 287 - 773

Fln protein: LSESYNPNVRNGAALAVGI*DLLCRQSIEAISLLGPLTSDVVDFVRQGALIAMAMFLVETNEAREPRVGSFRPQPEKIILDKYEDTMSNLGAILASGMLDAxxxxLNYELKVPKYEFLSHAMPSLFEYPHPTTPPTTTCAVKLPTAALSTGAKVKARAKKETDQEAAHTNCYE*GKHFW*SWTHERPKI**QGGL*MRETFLVKLGP*KAQNLVTRRGSNAGG*CT*KES*S*SIL*NSLKSCSSCSSTGKVY*FFEESRYVPIKLMPSGFVLLRDTKPSEPEVFV*

Protein Length: 288

Fln nts: TGTTGTCCGAGTCATATAATCCAAATGTCAGAAATGGAGCAGCCTTGGCAGTGGGTATCTGAGATCTCTTGTGCAGGCAGAGCATTGAGGCCATTTCGCTGCTGGGACCATTAACATCAGATGTGGTAGATTTTGTTCGTCAAGGTGCTCTTATAGCCATGGCTATGTTTCTTGTTGAAACAAATGAGGCACGTGAACCTCGTGTAGGTAGCTTCAGGCCTCAACCTGAGAAGATCATTCTCGACAAATATGAAGACACCATGAGCAATTTGGGTGCAATTTTAGCTTCTGGTATGTTAGATGCAxxxxxxxxxxxxCTCAATTATGAACTGAAGGTCCCAAAATATGAGTTTCTTTCACATGCCATGCCCTCATTATTTGAGTACCCTCATCCTACAACACCTCCAACAACAACTTGTGCAGTAAAATTGCCAACTGCTGCTTTGTCTACAGGAGCAAAGGTTAAAGCTAGAGCAAAGAAAGAAACAGATCAAGAAGCTGCTCATACAAACTGCTATGAATGAGGGAAACATTTCTGGTGAAGCTGGACCCATGAAAGGCCCAAAATCTAGTGACAAGGAGGGCTATGAATGAGGGAAACATTTCTGGTGAAGCTGGGCCCATGAAAGGCCCAAAATCTAGTGACAAGGAGGGGAAGCAATGCAGGTGGATAATGTACCTGAAAAGAAAGCTGAAGCTGATCGATCTTGTGAAATTCTCTCAAATCCTGTTCGAGTTGTTCCAGCACAGGAAAAGTATATTAATTTTTTGAAGAGAGTAGATATGTGCCCATTAAATTAATGCCTTCAGGGTTCGTTTTACTAAGGGACACCAAGCCATCAGAACCAGAAGTGTTTGTTTGACTGATGCACCTTCGTCATTAGCATCATCTGGAAATTCATCAATCCCCCAAGCACCTGCATCGGCTGTATCTGTTGAGGATGGAGAAT

Fln Alignment:

AllPine_a_rep_c113529___LSESYNPNVRNGAALAVGI*DLLCRQSI--EAISLLGPLTSDVVDFVRQGALIAMAMFLVETNEAREPRVGSFRPQPEKIILDKYEDTMSNLGAILASGMLDAGGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVVGLNYELKVPKYEFLSHAMPSLFEYPHXXXXXXXXCAVKLPTAALSTGAKVKARAKKETDQEAAHTNCYE*GKHFW*SWTHERPKI**QGGL*MRETFLVKLGP*KAQNLVTRRGS-----NAGG*CT*KES*XXXXXXXXXXXXXXXXXTGKVY*FFEESRYVPIKLMPSGFVLLRDTKPSEPEVFV
B8LQS7________________LSESYNPHVRYGAALAVGI---SCAGTALSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNEAREPRVGSFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLIGLNYELKVPKFEFLSHAKPSLFEYPRPTTPPTTTSAVKLPTAVLSTSA----KAKARAKKETDQKTAMDEGN------------------------ISGEAGPIKGSKSSDKEGEAIQLDNASE----KKAEAEPSCEILSNPARVVPAQEKYIKFFEESRYVPIKLMPSGFVLLRDTKPSEPEVFV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
621	14	85			0.993533
645		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain