SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144112

Length: 343 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene144112
AAACCCATATGTTGATAAGTATTGGGAGCCCAGCAACCATTCATATGACTGGAGAGGAATAATTGGTTGCATTGGAGGCTTCAACTGCAACTTGGAAAATAGTAATTGGTCATCATGCTATTAGGAGCGTGGGTTCACATGGAGACACAGAGGAACTGGTTCAGCAGCTATTGCCTATTATTGAAGCTCATGGTGTGGACCTGTATATGAATGGGCATGACCACTGTCTGGAGCATATTAGCAGCGTTAGCAGCCCTTTACAGTTTTTGACAAGTGGAGGGGGTTCGAAAGCTTGGAGGGGAATGAAAGAAGGGGCTAACATGGAGGGTTTGCAGTTCTTTCA

Ace file of the UniGene sp_v3.0_unigene144112 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative acid phosphatase [Lupinus luteus]	-	-	1.0e-33	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Putative purple acid phosphatase	-	-	1.153e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	4.816e-26	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		4.816e-26	%
Sma3	Riboflavin metabolism	00740		4.816e-26	%

Source	Gene names
Sma3	ACP5; AT1G25230; At1g14700; At1g25230; At2g01880; At2g01890; At3g17790; F10B6.10; F4F7.38; GSVIVT00030645001; LOC_Os03g13540; LOC_Os10g02750; LOC_Os11g34710; LOC_Os11g34720; MEB5.10; OSJNBa0023I19.10; Os03g0238600; Os10g0116800; OsI_10684; OsI_32568; OsI_

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	cellular phosphate ion homeostasis	GO:0030643	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G01890.1	PAP8, ATPAP8 purple acid phosphatase 8 chr2:396985-399168 REVERSE LENGTH=335	1.0e-36	63%
RefSeq	Arabidopsis thaliana	NP_973397.1	purple acid phosphatase 8 [Arabidopsis thaliana]	1.0e-36	63%
RefSeq	Populus trichocarpa	XP_002329742.1	predicted protein [Populus trichocarpa]	4.00001e-41	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZW8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 40 aas, your sequence is shorter than subject: 113 - 350

Fln protein: THMLISIGSPATIHMTGEE*LVALEASTATWKIVIGHHAIRSVGSHGDTEELVQQLLPIIEAHGVDLYMNGHDHCLEHISSVSSPLQFLTSGGGSKAWRGMKEGANMEGLQFF

Protein Length: 114

Fln nts: AAACCCATATGTTGATAAGTATTGGGAGCCCAGCAACCATTCATATGACTGGAGAGGAATAATTGGTTGCATTGGAGGCTTCAACTGCAACTTGGAAAATAGTAATTGGTCATCATGCTATTAGGAGCGTGGGTTCACATGGAGACACAGAGGAACTGGTTCAGCAGCTATTGCCTATTATTGAAGCTCATGGTGTGGACCTGTATATGAATGGGCATGACCACTGTCTGGAGCATATTAGCAGCGTTAGCAGCCCTTTACAGTTTTTGACAAGTGGAGGGGGTTCGAAAGCTTGGAGGGGAATGAAAGAAGGGGCTAACATGGAGGGTTTGCAGTTCTTTCA

Fln Alignment:

AllPine_a_rep_c113275___VALEASTATWKIVIGHHAIRSVGSHGDTEELVQQLLPIIEAHGVDLYMNGHDHCLEHISSVSSPLQFLTSGGGSKAWRGMKEGANMEGLQFF
A9NZW8________________VALETSTATWKIVIGHHTIRSVGSHGDTEEMIHQILPIIEAYGVDLYVNGHDHCLEHISSVNSPLQFLTSGGGSKAWRGMKEGANMEGLQFF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain