SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene144078

Length: 461 nt

UniGene Fasta

>sp_v3.0_unigene144078
TATTGGGGAGGCAGCCTGTATGCTTCTTAGAATTGATGACGTTGTAAGTGGAATAAAGAAGAAGCAAGCTCCAGGCAGTTCAGGACCAACAAAACCTCAAGTAGAGGATGAAAAGGACGTTGACAGTGAGCAGATGATTCCAGAATAATGAGATACCTGTTTACAATTAAGTCGCGCTTGTCAATTCCAGCAATGTTATTATGCTTTGGATGATAATGCTTCTGTCAAGATTTGCCACAGTTATTCGTTTTGGAGTGATAAATGTCAATGAGGAGAAAGTCGGGGGTGAGGGGGGCGTGTGTGATTTTGTGAGTACATTATAAATTTTTACGGGGTTCTCTCTCTAATTTTAACTTGCAGATGGACGGTAGGCATGCATTTATTTCAGACTCTAACCTGTTAGAGTCGAAAGAATAATTTCAATATATCTGGCCTACTGCTGCTGTCATTTCATAGAACAT

Ace file of the UniGene sp_v3.0_unigene144078

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to chaperonin containing TCP-1 complex gamma chain [Arabidopsis thaliana]	-	-	8.0e-12	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%

Source	Gene names
Sma3	At5g26360; F9D12.18; GSVIVT00003625001; GSVIVT00016108001; OSJNBa0090H18.25; Os02g0247200; Os06g0538000; OsI_06554; OsI_23266; P0551A03.30; PHYPADRAFT_217424; PHYPADRAFT_76060; PHYPADRAFT_90805; POPTRDRAFT_573556; POPTRDRAFT_714540; RCOM_0573520; VITISV_0

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	T-complex protein 1, gamma subunit	IPR012719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Chaperone, tailless complex polypeptide 1	IPR017998	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G26360.1	TCP-1/cpn60 chaperonin family protein chr5:9255561-9258891 REVERSE LENGTH=555	4.0e-15	73%
RefSeq	Arabidopsis thaliana	NP_198008.1	TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]	6.0e-15	73%
RefSeq	Populus trichocarpa	XP_002305345.1	predicted protein [Populus trichocarpa]	1.0e-16	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A831

Fln msg: your sequence is shorter than subject: 49 - 556

Fln protein: IGEAACMLLRIDDVVSGIKKKQAPGSSGPTKPQVEDEKDVDSEQMIPE*

Protein Length: 50

Fln nts: TATTGGGGAGGCAGCCTGTATGCTTCTTAGAATTGATGACGTTGTAAGTGGAATAAAGAAGAAGCAAGCTCCAGGCAGTTCAGGACCAACAAAACCTCAAGTAGAGGATGAAAAGGACGTTGACAGTGAGCAGATGATTCCAGAATAA___TGAGATACCTGTTTACAATTAAGTCGCGCTTGTCAATTCCAGCAATGTTATTATGCTTTGGATGATAATGCTTCTGTCAAGATTTGCCACAGTTATTCGTTTTGGAGTGATAAATGTCAATGAGGAGAAAGTCGGGGGTGAGGGGGGCGTGTGTGATTTTGTGAGTACATTATAAATTTTTACGGGGTTCTCTCTCTAATTTTAACTTGCAGATGGACGGTAGGCATGCATTTATTTCAGACTCTAACCTGTTAGAGTCGAAAGAATAATTTCAATATATCTGGCCTACTGCTGCTGTCATTTCATAGAACAT

Fln Alignment:

AllPine_a_rep_c113161___EAACMLLRIDDVVSGIKKKQAPGSSGPTKPQVEDEKDVDSEQMIPE
D5A831________________EAACMLLRIDDVVSGIKKKQAPGSSAPAKPQVEDEKDVDSEQMIPE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain