SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143947

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene143947
AGCAGGCCACAAAACTTCGAGTGTTAAATGTTTCTTTGTGCTCTCAGTTAGATGAGCTGCCAAGTATGGAATTATTGACATCTTTGGAAGAGTTGTGCGCAGTTGACTGTGTGAAGCTGAAGAACATAAGGGGCTTGTTGCAGTGTACACAGCTTCGAAGGCTATATCTTTATGGGTGCATTGAGTTAGAGGAGGTGGAATGTGTTGAACATTGTACGTGGTTGGAGGAGCTGTTTTTG

Ace file of the UniGene sp_v3.0_unigene143947

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	4.0e-18	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	TIR/P-loop/LRR	-	-	5.361e-06	-

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	0.0	-
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Z7

Fln msg: STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 79 - 117

Fln protein: QATKLRVLNVSLCSQLDELPSMELLTSLEELCAVDCVKLKNIRGLLQCTQLRRLYLYGCIELEEVECVEHCTWLEELFL

Protein Length: 80

Fln nts: AGCAGGCCACAAAACTTCGAGTGTTAAATGTTTCTTTGTGCTCTCAGTTAGATGAGCTGCCAAGTATGGAATTATTGACATCTTTGGAAGAGTTGTGCGCAGTTGACTGTGTGAAGCTGAAGAACATAAGGGGCTTGTTGCAGTGTACACAGCTTCGAAGGCTATATCTTTATGGGTGCATTGAGTTAGAGGAGGTGGAATGTGTTGAACATTGTACGTGGTTGGAGGAGCTGTTTTTG

Fln Alignment:

AllPine_a_rep_c112756___QATKLRVLNVSLCSQLDELPSMELLTSLEELCAVDCVKLKNIRGLLQCTQLRRLYLYGCIELEEVECVEHCTWLEEL
D5A9Z7________________QATKLQRLDVGGCSELDELPSMETLVSLECLWAEGCVKLKCIRGLEQCRQLRTLSVTGCSELEEVEGVEHCTWLEKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain