SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143869

Length: 644 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene143869

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin-dependent kinase B2-2 n=2 Tax=Arabidopsis RepID=CKB22_ARATH	-	-	2.0e-37	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Cyclin-dependent kinase	-	-	4.29e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cyclin-dependent kinase.	EC:2.7.11.22	-	4.62428e-44	-
Sma3	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	0.0	-

Source	Gene names
Sma3	13; At1g20930; At1g76540; At2g38620; At3g48750; At3g54180; CDC2; CDC2-1; CDC2-2; CDC2A; CDC2B; CDC2C; CDC2D; CDK-B; CDK34; CDKA; CDKA-1; CDKA-2; CDKA2; CDKB; CDKB1; CDKB1-1; CDKB1-2; CDKB2-1; CDKB2-2; CHLREDRAFT_59842; Cdc2; Cdc2a; CdkA; CdkA:4; CdkB1; Cd

Source	GOs	Term	Type	Identity
Sma3	cyclin-dependent protein kinase holoenzyme complex	GO:0000307	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	preprophase band	GO:0009574	Cellular Component	-
Sma3	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	cyclin-dependent protein kinase activity	GO:0004693	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	-
Sma3	cyclin binding	GO:0030332	Molecular Function	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	positive regulation of cell proliferation	GO:0008284	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	hormone-mediated signaling pathway	GO:0009755	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	stomatal complex formation	GO:0010376	Biological Process	-
Sma3	regulation of G2/M transition of mitotic cell cycle	GO:0010389	Biological Process	-
Sma3	histone phosphorylation	GO:0016572	Biological Process	-
Sma3	DNA endoreduplication	GO:0042023	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-
Sma3	regulation of cell cycle	GO:0051726	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	IPR013528	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20930.1	" CDKB2;2 cyclin-dependent kinase B2;2 chr1:7292752-7294664 REVERSE LENGTH=315"	6.00036e-42	70%
RefSeq	Arabidopsis thaliana	NP_173517.1	cyclin-dependent kinase B2-2 [Arabidopsis thaliana]	8.00001e-42	70%
RefSeq	Populus trichocarpa	XP_002336374.1	predicted protein [Populus trichocarpa]	5.0e-40	64%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	G %	T %	Probability
450		80	20	0.995493
451	80	20		0.995493
453	25		75	0.996474

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain