SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143849

Length: 403 nt

UniGene Fasta

>sp_v3.0_unigene143849
CGTCGTGACCTTGGCTGTCACTCATAATTTTTTGGTAGTTGGAGATTGGGGTAGAAAAGGCCTTTACAACCAGTCTAGAGTGGCTACTCAGATGGGAAGAATAGGAGAGGAGCTGGACATTGACTTCGTCATTTCTACTGGTGATAACTTTTATGACAATGGATTGACTGCCATTGGTGACCCAAGTTTTGAGGAATCGTTTTCTGGAATCTACACAGCCAAAAGCTTGCAGACACCATGGTATAGCGTGTTAGGGAACCATGATTACAGGGGAGATGTGTTAGCTCAGCTCAGTCCCTCTCTGAGAAGCCGAGATCCTCGATGGAACTGTGGAAGGTCATTCGTTCTCAAGTACGACATTTGCCCACATGGGCCTGCATCTGGAGAGCACACTTTTGCAGTA

Ace file of the UniGene sp_v3.0_unigene143849

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Purple acid phosphatase 3 n=3 Tax=Arabidopsis RepID=PPA3_ARATH	-	-	9.94922e-44	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Putative purple acid phosphatase	-	-	1.365e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	7.062e-26	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		7.062e-26	%
Sma3	Riboflavin metabolism	00740		7.062e-26	%

Source	Gene names
Sma3	ACP5; AT1G25230; At1g14700; At1g25230; At2g01880; At2g01890; At3g17790; F10B6.10; F4F7.38; GSVIVT00030645001; LOC_Os03g13540; LOC_Os10g02750; LOC_Os11g34710; LOC_Os11g34720; MEB5.10; MICPUCDRAFT_5488; MICPUN_57856; OSJNBa0023I19.10; Os03g0238600; Os10g011

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	cellular phosphate ion homeostasis	GO:0030643	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G14700.1	PAP3, ATPAP3 purple acid phosphatase 3 chr1:5058680-5060988 FORWARD LENGTH=366	72%
RefSeq	Arabidopsis thaliana	NP_172923.3	purple acid phosphatase 3 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002329741.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZW8

Fln msg: Distance to subject end: 173 aas, your sequence is shorter than subject: 134 - 350

Fln protein: VVTLAVTHNFLVVGDWGRKGLYNQSRVATQMGRIGEELDIDFVISTGDNFYDNGLTAIGDPSFEESFSGIYTAKSLQTPWYSVLGNHDYRGDVLAQLSPSLRSRDPRWNCGRSFVLKYDICPHGPASGEHTFAV

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAATTTTTTGGTAGTTGGAGATTGGGGTAGAAAAGGCCTTTACAACCAGTCTAGAGTGGCTACTCAGATGGGAAGAATAGGAGAGGAGCTGGACATTGACTTCGTCATTTCTACTGGTGATAACTTTTATGACAATGGATTGACTGCCATTGGTGACCCAAGTTTTGAGGAATCGTTTTCTGGAATCTACACAGCCAAAAGCTTGCAGACACCATGGTATAGCGTGTTAGGGAACCATGATTACAGGGGAGATGTGTTAGCTCAGCTCAGTCCCTCTCTGAGAAGCCGAGATCCTCGATGGAACTGTGGAAGGTCATTCGTTCTCAAGTACGACATTTGCCCACATGGGCCTGCATCTGGAGAGCACACTTTTGCAGTA

Fln Alignment:

AllPine_a_rep_c112409___NFLVVGDWGRKGLYNQSRVATQMGRIGEELDIDFVISTGDNFYDNGLTAIGDPSFEESFSGIYTAKSLQTPWYSVLGNHDYRGDVLAQLSPSLRSRDPRWNCGRSFVLKYDICPHGPASG
A9NZW8________________NFLVVGDWGRKGLYNQSRVATQMGRIGEELDIDFVISTGDNFYENGLTGIDDPSFEESFSGIYTAKSLQTPWYSVLGNHDYRGNALAQLSPSLRSQDHRWQCERSFILKYTIYPHDLQSG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
319		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain