SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143817

Length: 1219 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene143817

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1005 domain containing protein	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	35%

Source	Gene names
Sma3	At1g10020; At1g50040; At3g19680; At4g29310; F2J10.8; GSVIVT00015022001; GSVIVT00016640001; GSVIVT00022959001; GSVIVT00038592001; LOC_Os03g56220; OJ1118_D07.19; OSJNBb0094O03.10; Os01g0740400; Os03g0773000; Os07g0133500; OsI_03678; OsI_13693; OsI_24791; Os

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1005	IPR010410	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G10020.1	Protein of unknown function (DUF1005) chr1:3269939-3271732 REVERSE LENGTH=461	53%
RefSeq	Arabidopsis thaliana	NP_172473.1	uncharacterized protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002301131.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6HGX7

Fln msg: Overlapping hits, possible frame ERROR between 952 and 646, Distance to subject end: 140 aas, your sequence is shorter than subject: 290 - 417

Fln protein: MDPCPFMKVLVGGLALRIPVASKPTRAGIHSSRFPCFCEIKFDKFPVQIAAVPLISVDAPAPDVQNLVASFHLEHSELVKLSKNYSCLEVSNPQLDITxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKFSRDRNSRSRSIQCDSRNRGCLSSCSSSRERDIRVRKGWLVMIHDLSGSPVEAASMVTPFVPSVGTDRVSRSNPGAWLILRHMGEGS

Protein Length: 291

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCCCTTTTCCTTTATTTTCCTGGCATTATTATTAGATTTTTTAAGTAGCATCATGCTTCACAGCTCACACTCGCTCATCCCTGCGGAGAAGCCAAATTTATCCATCCCCAGGTTGCGAACCCTCCACACTTAGTGCACTCTTCTCTCGGTTCTGGCTATCTCCAGCCTGTGACAACCAAATCTCTGGTCACTCCTATAGGTCGACCTGAAAGCTATTCTGGGGTTAGATCTCTGCGAGAGTCGATTCCGTGAAGCCTCGAGACCACGTGTGTTCAGCAGGATTCAATCTGATGATGCTGTGAGAGTATTATTTATTGTTACAA_-_ATGGATCCGTGCCCGTTCATGAAGGTCTTGGTGGGAGGTTTGGCGCTGAGAATCCCCGTGGCCTCCAAACCCACCAGAGCAGGCATTCATTCTTCAAGATTTCCTTGCTTTTGCGAGATCAAATTTGATAAATTCCCAGTCCAGATAGCGGCGGTTCCTCTCATTTCTGTCGACGCTCCTGCCCCTGATGTCCAAAACTTGGTGGCGAGTTTTCATTTGGAGCATTCGGAGCTAGTGAAGCTTTCCAAGAATTATTCTTGCCTCGAGGTTTCGAATCCGCAGCTGGACATTACGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGTTTAGCCGCGACAGGAATTCTAGATCACGATCGATCCAATGTGACTCAAGAAATAGGGGCTGTTTAAGCTCCTGCAGTAGTAGTCGGGAGAGAGATATAAGGGTACGGAAAGGATGGTTGGTTATGATACATGATCTTTCTGGGTCTCCAGTTGAAGCTGCATCAATGGTAACTCCTTTTGTTCCTTCAGTTGGTACAGATAGGGTTAGCCGCTCTAACCCTGGAGCTTGGCTTATTCTTAGACATATGGGAGAAGGCAGTT

Fln Alignment:

AllPine_a_rep_c112245___MDPCPFMKVLVGGLALRIPVASKPTRAGIHSSRFPCFCEIKFDKFPVQIAAVPLISVDA-PAPDVQNLVASFHLEHSELVKLSKNYSCLEVSNPQLDITVTQAGRVRTAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPIFSCKFSRDRNSRSRSIQCD--SRNRGCLSSCSSSRERDIRVRKGWLVMIHDLSGSPVEAASMVTPFVPSVGTDRVSRSNPGAWLILRHMG
F6HGX7________________MDPCPFVRLIVESLALKLPQATRPAGSGVHPSTTPCFCKLRIKNFPSQTALLPLCSSGGDPSPDSTISSAGFHLDSALLRRLSGKPLTLRVS-----VYTGRMGRT----xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPVFSCKFSADRNSRSRSLASDFNSNNRGWMRSFSNERERPGRERKGWMIMIYDLSGSPVASASMITPFVPSPGSDRVSRSNPGAWLILRPHG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
568		25		75	0.996473
580	25		75		0.996473
612		75		25	0.996473
617	75		25		0.996473
631		75		25	0.996473
664	33		66		0.997452
785			33	66	0.997452
805	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain