SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143781

Length: 1134 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene143781 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Disease resistance associated protein (Fragment) n=8 Tax=Pinaceae RepID=Q2VWL9_PICAB	-	-	0.0	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	Gene names
Sma3	ADR1; At1g33560; At4g33300; At5g04720; F10C21.19; F17M5.60; GSVIVT00014747001; LOC_Os12g39620; LRR1; MUK11.4; Os12g0586000; OsI_38915; OsJ_36681; POPTRDRAFT_710696; POPTRDRAFT_826770; RCOM_1591970; RGC-CC_1; T1E3.80; T1E4.6; VITISV_006255;

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33300.1	ADR1-L1 ADR1-like 1 chr4:16051162-16054005 REVERSE LENGTH=816	3.0e-28	50%
RefSeq	Arabidopsis thaliana	NP_195056.2	putative disease resistance protein ADR1-like 1 [Arabidopsis thaliana]	4.0e-28	50%
RefSeq	Populus trichocarpa	XP_002327103.1	nbs-lrr resistance protein [Populus trichocarpa]	1.0e-31	55%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
638	33		66		0.997464
661	66	33			0.997452
726			66	33	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain