SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143766

Length: 424 nt

UniGene Fasta

>sp_v3.0_unigene143766
ATGGGGGACCCTGGTAATGCTGTAGGGAGGGTTCGATATCTCGAAAACCCAGTAATTCCCCTATTGTTGGGGAAGACTAAAATATTTCTATATAAGAACCTCTGTGTTCCTCACTTGTAATCATAGTACATCTGCACTTCTCCTCTATCTTGTTTCTTGAAAAATATTTCAGCTCGCAAGCTTTGTATATTACAATGGGTTCTACTGGAAAGATCAAGATTGGAATCAACGGTTTTGGTCGAATTGGAAGGCTCGTCGCCCGTGTGGCTCTGACTCGCGATGATATCGAGCTCGTGGGGGTGAATGATCCGTTCATTCACCCCCACGGATTATATGACTTATATGTTCAAGTATGACAGTGTCCACGGCAAATGGAAACATGATGAAGTCAAAGTCAAAGACTCGAAAACTTTACTATTTGGAG

Ace file of the UniGene sp_v3.0_unigene143766

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic n=4 Tax=Spermatophyta RepID=G3PC_GINBI	-	-	7.0e-27	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating).	EC:1.2.1.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT1G13440; At1g13440; At1g16300; At1g79530; At1g79530/T8K14_5; At3g04120; CHLREDRAFT_140618; G3PDH; GAP1a\|GAP1b; GAPC; GAPC1; GAPC2; GAPC3; GAPDH; GAPDH2; GAPDH_1; GAPDHc; GPC; GPC1; GPC2; GPC3; GPD1; GSVIVT00002074001; GSVIVT00009717001; GSVIVT0002057000

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrial envelope	GO:0005740	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	GO:0004365	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glucose metabolic process	GO:0006006	Biological Process	-
Sma3	gluconeogenesis	GO:0006094	Biological Process	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	seed development	GO:0048316	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Glyceraldehyde-3-phosphate dehydrogenase, type I	IPR006424	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	CS domain	IPR017447	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04120.1	GAPC, GAPC-1, GAPC1 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 chr3:1081077-1083131 FORWARD LENGTH=338	3.0e-26	77%
RefSeq	Arabidopsis thaliana	NP_187062.1	glyceraldehyde-3-phosphate dehydrogenase, cytosolic [Arabidopsis thaliana]	3.0e-26	77%
RefSeq	Populus trichocarpa	XP_002318114.1	predicted protein [Populus trichocarpa]	3.0e-28	91%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTQ1

Fln msg: Overlapping hits, possible frame ERROR between 317 and 316, Distance to subject end: 265 aas, your sequence is shorter than subject: 77 - 340

Fln protein: MGSTGKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFxxTPTDYMTYMFKYDSVHGKWKHDEVKVKDSKTLLFG

Protein Length: 78

Fln nts: ATGGGGGACCCTGGTAATGCTGTAGGGAGGGTTCGATATCTCGAAAACCCAGTAATTCCCCTATTGTTGGGGAAGACTAAAATATTTCTATATAAGAACCTCTGTGTTCCTCACTTGTAATCATAGTACATCTGCACTTCTCCTCTATCTTGTTTCTTGAAAAATATTTCAGCTCGCAAGCTTTGTATATTACA_-_ATGGGTTCTACTGGAAAGATCAAGATTGGAATCAACGGTTTTGGTCGAATTGGAAGGCTCGTCGCCCGTGTGGCTCTGACTCGCGATGATATCGAGCTCGTGGGGGTGAATGATCCGTTCxxxxxxACCCCCACGGATTATATGACTTATATGTTCAAGTATGACAGTGTCCACGGCAAATGGAAACATGATGAAGTCAAAGTCAAAGACTCGAAAACTTTACTATTTGGAG

Fln Alignment:

AllPine_a_rep_c111970___MGSTGKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPxxPTDYMTYMFKYDSVHGKWKHDEVKVKDSKTLLFG
A9NTQ1________________MGSTGKIKIGINGFGRIGRLVARVALTRDDIELVAVNDPxxSTDYMTYMFKYDSVHGQWKHNEVKVKDSKTLLFG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
320		66		33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain