SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143739

Length: 1182 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene143739

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S protease regulatory subunit S10B homolog B n=24 Tax=Spermatophyta RepID=PS10B_ARATH	-	-	0.0	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	Proteasomal ATPase	-	-	1.545e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	1.87e-08	-
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	2.719e-15	-

Source	Gene names
Sma3	26S proteasome subunit; AT4g29040; AT5G42270; At1g09100; At1g45000; At1g45000/F27F5.8; At1g53750; At2g20140; At3g02450; At3g02450/F16B3.8; At3g05530; At3g05530/F22F7.1; At4g29040; At5g19990; At5g20000; At5g42270; At5g43010; At5g58290; AtSUG1; BrTBP; CDC48

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	PSII associated light-harvesting complex II catabolic process	GO:0010304	Biological Process	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M41	IPR000642	-	-
Sma3	NSF attachment protein	IPR000744	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G45000.1	AAA-type ATPase family protein chr1:17009220-17011607 FORWARD LENGTH=399	93%
RefSeq	Arabidopsis thaliana	NP_175120.1	AAA-type ATPase family protein [Arabidopsis thaliana]	93%
RefSeq	Populus trichocarpa	XP_002313775.1	predicted protein, partial [Populus trichocarpa]	96%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLX8

Fln msg: your sequence is shorter than subject: 228 - 398

Fln protein: PKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGDIDYEAVVKLAEGFNGADLRNVCTEAGMLAIRAERDYVIHEDCMKAVRKLNEAKKLESSSHYDADFGKD*

Protein Length: 229

Fln nts: CTCCCAAGGGGGTTCTTCTATATGGCCCTCCTGGTACAGGTAAGACACTGTTGGCAAGAGCTATTGCCAGCAACATTGAAGCCAATTTCTTAAAGGTTGTTTCGAGTGCCATAATAGATAAATATATTGGTGAAAGTGCTAGGTTGATAAGGGAAATGTTTGGATATGCACGAGATCACCAACCATGCATTATTTTTATGGATGAAATTGATGCAATTGGTGGACGCCGTTTCAGTGAAGGAACAAGTGCTGACAGAGAGATTCAGAGGACTCTAATGGAGTTACTCAATCAGCTGGACGGGTTTGATCAATTGGGAAAAGTAAAAATGATCATGGCCACCAATCGACCAGATGTTCTGGACCCTGCCTTGCTTCGACCAGGTCGTTTGGATCGGAAGATTGAAATTCCGTTACCAAATGAACAAGCAAGAATGGAAGTTTTGAAAATACATGCTGCAGGAATAGCAAAACATGGAGATATAGATTATGAAGCTGTAGTAAAGCTGGCTGAGGGATTCAATGGAGCGGACCTTCGAAATGTTTGCACAGAAGCTGGCATGTTAGCCATCCGAGCAGAGCGTGATTATGTAATTCATGAGGATTGTATGAAGGCTGTTCGAAAATTGAATGAAGCAAAGAAACTGGAGTCGAGTTCACACTATGATGCGGACTTTGGAAAGGACTAG___TAAAATAATGAAGTAACAAACCAATAAGAGATAAACTCTGCGATTTAGTTCATTTCAGAGGCATTTTCCTTTGCAGTCGTTATAGTTTCACGACAAAGGATGTGTTATGCATCATCGTTGATATGGGTCAGTTTACCTCTCATGTCTCGAGTGCCATTTGATGACAGTGATTTACATATTCTACAGAAGATTGGACATTCAAGAGTATGCAAATAATATTTCTTTGTGTCGCAGAAGATCAACATTTCAAAGCTTGGACATCTTTAGCTTGGGAAATTTCATCATAAATTTCTTGGGACATGATCAGTCTAACCTTTTTCATTAAAAGCTTGGTTGAAATATGATCTTGGCATCCTGGTGCTTTGTTTGACGTAGCCTGTATGGAAGGATAGGCTACGGCCTTATGCATCGTACTACTTGACTGATTGTTTCGACATTCTCAACATATACACATGTTTCATTCTTCGCATGCTTGCTTGCTAAATTCTATGGTTGG

Fln Alignment:

AllPine_a_rep_c111844___PKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGDIDYEAVVKLAEGFNGADLRNVCTEAGMLAIRAERDYVIHEDCMKAVRKLNEAKKLESSSHYDADFGKD
B8LLX8________________PKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGDIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESTSHYNADFGKD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
564		50		50	1.0
587			20	80	0.995493
588	80		20		0.995493
589			25	75	0.996473
1105			25	75	0.996473
1106	75		25		0.996473
1155	33			33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain