SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143682

Length: 536 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene143682
ATGGGGATAGCCATATCTGTTACTTCAGTTTCGGAGGCACAATAGATCCAAACTCCGTGTGTAGTGATCTGCTATGGTCTGCAAACATGGGTTGCGCTATTCGTGCACAGAGAAAAGGATCAGGCTCCATGCTTAGATCCCACACCCATCACAGGAACGAACCTGCACGTTTGGGAAGCCTCGACTATGGCGAGCATAATGGCTACATCATGGTAATTTTCATGGACGTAACACACGACCCTTGGCTGCAGCGCTCCCCTCTACAAGGTGACCTTTGGGCACCCATTCCGTTACAAGCATCAGAAAGAGCTCTTATTAGCTGCTGAAGGTATTTGCACGGGACATTTTGTTTATTGCGGAAAGAAGGCCAATTTGACTGTGGGTAGCTTGTTGCCTTTGAGATCTATTCTGGAGGGAGCCATTGTCTGCAACATGGAATAGAATGTTGGAAATCGAGGTTCGTTTGCTAGGACTTCTGGAGACTAAGCCATCATCGTCAGCCACGATATTGATAGTGACACTACCAAGGTCCTCTA

Ace file of the UniGene sp_v3.0_unigene143682 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L2-like [Solanum tuberosum]	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	60S ribosomal protein L2	-	-	1.237e-07	-

Source	Gene names
Sma3	At3g51190; At4g36130; CHLREDRAFT_172406; EMB2296; F23E13.20; F24M12.230; GSVIVT00026101001; GSVIVT00027466001; GSVIVT00036802001; LOC_Os12g38000; MICPUCDRAFT_49650; MICPUN_95460; MtrDRAFT_AC159144g11v2; OSTLU_31116; Os12g0567700; OsI_38771; OsJ_36548; PHA

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L2	IPR002171	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	-
Sma3	RNA polymerase Rpb2, OB-fold	IPR014724	-	-
Sma3	Ribosomal protein L2, domain 3	IPR014726	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G18020.1	EMB2296 Ribosomal protein L2 family chr2:7837151-7838160 FORWARD LENGTH=258	64%
RefSeq	Arabidopsis thaliana	NP_179393.1	60S ribosomal protein L8-1 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002310303.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT38

Fln msg: Separated hits, possible frame ERROR between 242 and 244, Unexpected STOP codon at 3' end. Distance to subject end: 111 aas, your sequence is shorter than subject: 134 - 261

Fln protein: MGCAIRAQRKGSGSMLRSHTHHRNEPARLGSLDYGEHNGYIMVIFMDVTHDxxGCSAPLYKVTFGHPFRYKHQKELLLAAEGICTGHFVYCGKKANLTVGSLLPLRSILEGAIVCNME*NVGNRGSFARTSGD*

Protein Length: 135

Fln nts: ATGGGGATAGCCATATCTGTTACTTCAGTTTCGGAGGCACAATAGATCCAAACTCCGTGTGTAGTGATCTGCTATGGTCTGCAAAC_-_ATGGGTTGCGCTATTCGTGCACAGAGAAAAGGATCAGGCTCCATGCTTAGATCCCACACCCATCACAGGAACGAACCTGCACGTTTGGGAAGCCTCGACTATGGCGAGCATAATGGCTACATCATGGTAATTTTCATGGACGTAACACACGACCCxxxTGGCTGCAGCGCTCCCCTCTACAAGGTGACCTTTGGGCACCCATTCCGTTACAAGCATCAGAAAGAGCTCTTATTAGCTGCTGAAGGTATTTGCACGGGACATTTTGTTTATTGCGGAAAGAAGGCCAATTTGACTGTGGGTAGCTTGTTGCCTTTGAGATCTATTCTGGAGGGAGCCATTGTCTGCAACATGGAATAGAATGTTGGAAATCGAGGTTCGTTTGCTAGGACTTCTGGAGACTAAGCCATCATCGTCAGCCACGATATTGATAGTGACACTACCAAGGTCCTCTA

Fln Alignment:

AllPine_a_rep_c111655___MGCAIRAQRKGSGSMLRSHTHHRNEPARLGSLDYGEHNGYIMVIFMDVTHDPxGCSAPLYKVTFGHPFRYKHQKELLLAAEGICTGHFVYCGKKANLTVGSLLPLRSILEGAIVCNME*NVGNRGSFARTSGD*AIIVSHDIDSDTTKV
C0PT38________________MGRVIRAQRKGAGSVFRSHTHHRKGPARFRSLDYGERNGYIKGIVSDVIHDPxGRGAPLCKVTFRHPFRYRHQKELFVAAEGMYTGQFVYCGKKANLIVGNVLPLRSIPEGAIVCNVEQHVGDRGSFARASGDYAIVVSHNFDNGTSRI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain