SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143656

Length: 395 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene143656
CAGATAGAGAGTTCTGGTCGAGATACAGGTAGGTCAATCTTGGAAGAGAAGCAAGCTCCGGTGGCACAACGCCAGAAATTTTGTTGTCAGACAAGTACAGAATTTCCAAATTTGTATCTGAGTTTCAACAACTTACGAGGATCAATTCCAAAAGAACTTGGGAATTTGCCAGAGCTTCGCTATCTCTACCTTCATGAAAATCGACTCACAGGACGAATTCCTCCAGAACTGGGAATTCTTCCCAACCTTCGTCACTTAGATGTTGGCAATAATCACCTGGTAGGGACTATAAGAGAGCTCATCCGTATGGAGGGTTGCTTTCCATCTCTTCGTAATTTGTATCTTAATAACAATTACTTGACAGGAGGAATTCCTGCACAGCTTGCCAACACATT

Ace file of the UniGene sp_v3.0_unigene143656 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat resistance protein-like protein [Gossypium hirsutum]	-	-	5.0e-30	71%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	43%

Source	Gene names
Sma3	AT1G35710; At1g13910; At1g13910/F16A14_5; At1g35710; At5g61240; F14D7.1; GSVIVT00030054001; LOC_Os03g11340; LRR; LRR-RLK; Os03g0211900; OsI_10498; OsJ_09888; POPTRDRAFT_1084806; POPTRDRAFT_1095884; POPTRDRAFT_226191; RCOM_1621580;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G61240.2	Leucine-rich repeat (LRR) family protein chr5:24629485-24631958 FORWARD LENGTH=339	2.0e-37	80%
RefSeq	Arabidopsis thaliana	NP_200932.2	leucine-rich repeat-containing protein [Arabidopsis thaliana]	2.0e-37	80%
RefSeq	Populus trichocarpa	XP_002312277.1	predicted protein [Populus trichocarpa]	8.99998e-41	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 537 aas, your sequence is shorter than subject: 131 - 1145

Fln protein: QIESSGRDTGRSILEEKQAPVAQRQKFCCQTSTEFPNLYLSFNNLRGSIPKELGNLPELRYLYLHENRLTGRIPPELGILPNLRHLDVGNNHLVGTIRELIRMEGCFPSLRNLYLNNNYLTGGIPAQLANT

Protein Length: 132

Fln nts: CAGATAGAGAGTTCTGGTCGAGATACAGGTAGGTCAATCTTGGAAGAGAAGCAAGCTCCGGTGGCACAACGCCAGAAATTTTGTTGTCAGACAAGTACAGAATTTCCAAATTTGTATCTGAGTTTCAACAACTTACGAGGATCAATTCCAAAAGAACTTGGGAATTTGCCAGAGCTTCGCTATCTCTACCTTCATGAAAATCGACTCACAGGACGAATTCCTCCAGAACTGGGAATTCTTCCCAACCTTCGTCACTTAGATGTTGGCAATAATCACCTGGTAGGGACTATAAGAGAGCTCATCCGTATGGAGGGTTGCTTTCCATCTCTTCGTAATTTGTATCTTAATAACAATTACTTGACAGGAGGAATTCCTGCACAGCTTGCCAACACATT

Fln Alignment:

AllPine_a_rep_c111580___TEFPNLYLSFNNLRGSIPKELGNLPELRYLYLHENRLTGRIPPELGILPNLRHLDVGNNHLVGTIRELIRMEGCFPSXXXXXXXXXXLTGGIPAQLAN
Q9FEU2________________SELVNLYLYENRLSGAIPRELGKLQKLEKLYLWDNELDGSIPAELGSCSSLKFVDLSTNSLSGSIPDSF---GSLKNLSELEITDNNVSGSIPAALAN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain