SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143586

Length: 205 nt

UniGene Fasta

>sp_v3.0_unigene143586
GATAGGTAAGGTTTCTCGAGCAATTTGCATCATGAGCCACCCCGTTCAAAATAATCTGCAGTGATTGTGAATCATTTGTATTTGGAACGGGGTGGCTCATGATGCAAATGATTCACAATCACTGCAGATTATTTTGCCTCAAAAGCAACTTGGACGCAAATCTGATATGTATGTATTTTGCTGTTCCCATTCACATAATGTTGCT

Ace file of the UniGene sp_v3.0_unigene143586

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rab-GDP dissociation inhibitor n=2 Tax=Solanum lycopersicum RepID=A5CKE3_SOLLC	-	-	6.0e-15	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%

Source	Gene names
Sma3	At2g44100; At2g44100/F6E13.23; rab-GDI;

Source	GOs	Term	Type	Identity
Sma3	Rab GDP-dissociation inhibitor activity	GO:0005093	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	regulation of GTPase activity	GO:0043087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Rab GDI protein	IPR000806	-	-
Sma3		IPR002005	-	-
Sma3	GDP dissociation inhibitor	IPR018203	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G44100.1	ATGDI1, AT-GDI1, GDI1 guanosine nucleotide diphosphate dissociation inhibitor 1 chr2:18241804-18244864 FORWARD LENGTH=445	4.0e-20	61%
RefSeq	Arabidopsis thaliana	NP_001078054.1	guanosine nucleotide diphosphate dissociation inhibitor 1 [Arabidopsis thaliana]	4.0e-20	61%
RefSeq	Populus trichocarpa	XP_002310487.1	predicted protein [Populus trichocarpa]	5.0e-18	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9NWR2

Fln msg: Distance to subject end: 99 aas, your sequence is shorter than subject: 68 - 444

Fln protein: IGKVSRAICIMSHPVQNNLQ*L*IICIWNGVAHDANDSQSLQIILPQKQLGRKSDMYVFCCSHSHNVA

Protein Length: 69

Fln nts: GATAGGTAAGGTTTCTCGAGCAATTTGCATCATGAGCCACCCCGTTCAAAATAATCTGCAGTGATTGTGAATCATTTGTATTTGGAACGGGGTGGCTCATGATGCAAATGATTCACAATCACTGCAGATTATTTTGCCTCAAAAGCAACTTGGACGCAAATCTGATATGTATGTATTTTGCTGTTCCCATTCACATAATGTTGCT

Fln Alignment:

AllPine_a_rep_c111378___IGKVSRAICIMSHPVQNNLQ*L*IICIWNGVAHDANDSQSLQIILPQKQLGRKSDMYVFCCSHSHNVA
A9NWR2________________VGKVARAICIMSHPIPN-----------------TNDSQSVQIILPQKQLGRKSDMYVFCCSYSHNVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain