SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143564

Length: 465 nt

UniGene Fasta

>sp_v3.0_unigene143564
CATCTTCTTGACCTATGTCAAGAAAATCCTGGACGTTATGTATTGCTGTCAAACATCTATGCTGCGGCTGGTAGGTGGGATGACGTAGAAAAGGTGAGAACAATGATGAAAAAAAGGAGATTGAACAAGACACCGGGATGTAGCCTGATTGAGTTTAATAAAAAAGTTTACACATTTGTTGTGGGAGACAAGTCACATCCTCAATCAGACAAAATTTATGCGCTGTTGGATACGTTGGCCGGGAAAATGAAGGAAGCAGGATATGTCCCTGACACAAACTTTGCACTGCATGATGTGGAAGAGGAAGTGAAGGAGCACAACCTATCCAGTCACAGTGAGAAGCTAGCCATTGCTTTTGGGCTTATCAATACAAGCTCAGAAACCCCTATTCGAATCTCCAAAAACCTTCGTGTGTGTGGTGATTGCCACACTGCTACTAAGTTCATCTCCAAGATTGTTAGGAGA

Ace file of the UniGene sp_v3.0_unigene143564

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Pentatricopeptide repeat protein	-	-	4.16186e-43	-

Source	Gene names
Sma3	At1g08070; At1g09410; At1g11290; At1g20230; At2g22070; At3g08820; At3g23330; At3g26782; At3g49140; At3g49170; At3g57430; At3g62890; At3g63370; At4g02750; At4g30700; At4g33170; At4g33990; At4g37380; At5g09950; At5g16860; B1032F05.19; B1080A02.28; DYW9; EMB

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G49142.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:18215788-18217848 REVERSE LENGTH=686	59%
RefSeq	Arabidopsis thaliana	NP_001190038.1	tetratricopeptide repeat-like family protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002324235.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 24 aas, your sequence is shorter than subject: 155 - 312

Fln protein: HLLDLCQENPGRYVLLSNIYAAAGRWDDVEKVRTMMKKRRLNKTPGCSLIEFNKKVYTFVVGDKSHPQSDKIYALLDTLAGKMKEAGYVPDTNFALHDVEEEVKEHNLSSHSEKLAIAFGLINTSSETPIRISKNLRVCGDCHTATKFISKIVRR

Protein Length: 156

Fln nts: CATCTTCTTGACCTATGTCAAGAAAATCCTGGACGTTATGTATTGCTGTCAAACATCTATGCTGCGGCTGGTAGGTGGGATGACGTAGAAAAGGTGAGAACAATGATGAAAAAAAGGAGATTGAACAAGACACCGGGATGTAGCCTGATTGAGTTTAATAAAAAAGTTTACACATTTGTTGTGGGAGACAAGTCACATCCTCAATCAGACAAAATTTATGCGCTGTTGGATACGTTGGCCGGGAAAATGAAGGAAGCAGGATATGTCCCTGACACAAACTTTGCACTGCATGATGTGGAAGAGGAAGTGAAGGAGCACAACCTATCCAGTCACAGTGAGAAGCTAGCCATTGCTTTTGGGCTTATCAATACAAGCTCAGAAACCCCTATTCGAATCTCCAAAAACCTTCGTGTGTGTGGTGATTGCCACACTGCTACTAAGTTCATCTCCAAGATTGTTAGGAGA

Fln Alignment:

AllPine_a_rep_c111326___LLDLCQENPGRYVLLSNIYAAAGRWDDVEKVRTMMKKRRLNKTPGCSLIEFNKKVYTFVVGDKSHPQSDKIYALLDTLAGKMKEAGYVPDTNFALHDVEEEVKEHNLSSHSEKLAIAFGLINTSSETPIRISKNLRVCGDCHTATKFISKIVRR
D5ADG9________________LLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPGCSLIEVNNKLHSFVVGDISHPQTEAIYAMLETLARQMEAVGYVPCTDFVLHDVEEEIKENMLFAHSEKLAIAFGLISTRSGTSIRITKNLRVCGDCHSATKFISKIVKR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
191	66	33			0.997458
195	66		33		0.997458
196		66		33	0.997458
197	66		33		0.997458
198	33			66	0.997458
213	66			33	0.997476
214	66	33			0.997476
241		66		33	0.997457
286	66		33		0.997453
316	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain