SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143377

Length: 886 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene143377

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0140100 protein n=2 Tax=Oryza sativa RepID=Q9AWT3_ORYSJ	-	-	0.0	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Aspartic proteinase nepenthesin-1	-	-	5.345e-16	-

Source	Gene names
Sma3	At1g01300; At1g25510; At3g59080; At3g61820; At5g33340; F15G16.210; F2J7.6; F6F3.10; GSVIVT00017643001; GSVIVT00030305001; OJ1115_D04.13; OSJNBa0022J22.7; Os05g0590000; Os06g0610800; OsI_21202; OsI_23679; OsJ_19741; P0490F09.29-1; POPTRDRAFT_1072380; POPTR

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G25510.1	Eukaryotic aspartyl protease family protein chr1:8959372-8960823 REVERSE LENGTH=483	1.0e-34	48%
RefSeq	Arabidopsis thaliana	NP_173922.1	aspartyl protease-like protein [Arabidopsis thaliana]	2.0e-34	48%
RefSeq	Populus trichocarpa	XP_002315953.1	predicted protein [Populus trichocarpa]	2.0e-35	50%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUE4

Fln msg: Overlapping hits, possible frame ERROR between 149 and 134, and overlapping frame ERROR between 403 and 400, and possible frame ERROR between 642 and 647, STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 296 - 485

Fln protein: KRSSLRPDSSSASSMSESDFQSPVVSGMDQGSGEYFSRIGVGSxxxxxxxVLDTGSDVSWIQCNPCSDCYQQADPIYTPALSSTFKLVGCQASLCQQLDVSGCSRNGSCMYQVSYGDGSYTLGNFATETLTxxxxNVPNMAIGCGHDNEGLFVGASGLLGLGGGALSFPSQLTDESGKIFSYCLVDRDSESSSTLQFGRAAVPNGAVVAPMLKxxAVSLFDTCYDLSSKDSVDVPTVGFHFPGGGSMSLPAKNYLVPVDSMGTFCFAFAPTSSSLSIVGNIQQQGTRVSFCTALII

Protein Length: 297

Fln nts: TCAAACGTTCGAGTCTCAGGCCCGACTCCTCATCGGCTTCTAGCATGTCGGAGTCTGACTTCCAGAGCCCCGTGGTCTCCGGCATGGACCAAGGTAGCGGCGAATACTTCTCCCGGATCGGTGTCGGTTCTxxxxxxxxxxxxxxxxxxxxxGTGCTCGACACCGGCTCTGATGTGAGCTGGATCCAGTGCAACCCCTGTTCGGATTGTTACCAGCAAGCTGACCCCATTTACACCCCGGCGCTCTCTTCGACCTTTAAGTTAGTCGGCTGCCAGGCGAGCCTCTGCCAGCAGCTCGACGTCTCCGGGTGCAGTCGCAACGGGAGCTGCATGTACCAGGTGAGCTACGGCGACGGATCGTACACGTTGGGGAACTTCGCAACGGAGACGCTAACACTxxxxxxxxxCAACGTGCCGAACATGGCCATCGGCTGTGGCCACGATAACGAGGGACTGTTCGTCGGTGCCTCGGGGCTTCTTGGCCTCGGCGGAGGGGCGTTGTCGTTCCCTTCGCAGTTAACGGACGAAAGCGGTAAAATATTTTCCTACTGTCTCGTAGACCGTGACTCCGAATCCTCGAGCACTCTCCAGTTCGGCCGGGCCGCGGTGCCCAACGGAGCCGTGGTAGCGCCGATGCTGAAGxxxxxxGCCGTCTCGCTCTTCGACACCTGCTACGATCTCTCCTCCAAAGATTCCGTCGACGTGCCGACCGTCGGTTTCCATTTTCCCGGCGGCGGCAGTATGTCGCTTCCGGCGAAGAATTATCTGGTTCCCGTCGACTCGATGGGCACTTTCTGTTTCGCCTTTGCGCCGACGTCGTCGAGTCTGTCTATTGTCGGGAATATTCAGCAGCAGGGAACCCGAGTTTCGTTTTGTACCGCGTTAATAATC

Fln Alignment:

AllPine_a_rep_c110721___PVVSGMDQGSGEYFSRIGVGSPxxxxxMVLDTGSDVSWIQCNPCSDCYQQADPIYTPALSSTFKLVGCQASLCQQLDVSGCSRNGSCMYQVSYGDGSYTLGNFATETLTLGxDNVPNMAIGCGHDNEXXXXXXXXXXXXXXXXXXXPSQLTDESGKIFSYCLVDRDSESSSTLQFGRAAVPNGAVVAPMLKNxxVSLFDTCYDLSSKDSVDVPTVGFHFPGGGSMSLPAKNYLVPVDSMGTFCFAFAPTSSSLSIVGNIQQQGTRVSF
A9NUE4________________PVVSGMDQGSGEYFSRIGVGAPxxxxxMVLDTGSDVTWIQCEPCSDCYQQSDPIYNPALSSSYKLVGCQANLCQQLDVSGCSRNGSCLYQVSYGDGSYTQGNFATETLTLGxAPLQNVAIGCGHDNEGLFVGAAGLLGLGGGSLSFPSQLTDENGKIFSYCLVDRDSESSSTLQFGRAAVPNGAVLAPMLKNxxVSLFDTCYDLSSKESVDVPTVVFHFSGGGSMSLPAKNYLVPVDSMGTFCFAFAPTSSSLSIVGNIQQQGIRVSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain