SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143356

Length: 1621 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene143356

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase, putative n=1 Tax=Ricinus communis RepID=B9RP81_RICCO	-	-	3.0e-10	71%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	74%
Sma3	Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase	-	-	9.698e-09	-

Source	Gene names
Sma3	AT4g32420; At4g32420; CYP63; CYP95; F8B4.120; GSVIVT00023812001; GSVIVT00032607001; LOC_Os03g22380; OSJNBb0056C19.2; Os02g0204300; OsI_11526; OsJ_05815; OsJ_10806; P0544H11.18; RCOM_0924670; RCOM_0990970; VITISV_020758; VITISV_034442;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	Splicing factor PWI	IPR002483	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: F6H3U3

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 136 aas, putative chimeric sequence, your sequence is shorter than subject: 303 - 796

Fln protein: RYCGRR*ISERE*GENQRDGCC*S*GRQESRFSIASERCP*WF*VSLPFTFSRNGM*MLCECHGSAFKVFVILFVRLTLQELSTGLVVQILALRFICQGVI*SLQCLYILI*IDVL*LYL*VIALVSTRSPSRSPRKSLSRSPKRSLSRSQSESPRRILSRSLSRSPRRVLSRSPRMSLSRSPSVIARRHLSRSPSVVTRRPLSRSPRRSLSRHSRQNLAQSPPKSRSSPPSRRLSRSRSPVVDKSTLPPPNQSQTTARSPSPEGTPKRVRRGRGFSQRYSYARRYRTPSPRPLSPKVSSRQ*

Protein Length: 304

Fln nts: AAAGATATTGTGGAAGAAGGTGAATTAGTGAAAGAGAATGAGGAGAAAACCAAAGAGATGGATGTTGTTGAAGTTAAGGCAGACAGGAGTCCAGATTCTCGATCGCCTCAGAGCGATGCCCCTAGTGGTTCTAGGTTAGTCTTCCTTTCACTTTTTCACGAAATGGTATGTGAATGTTATGTGAATGTCATGGAAGTGCATTTAAAGTCTTTGTCATTTTGTTTGTGAGATTAACTTTGCAAGAACTTTCTACAGGTTTGGTGGTTCAAATATTGGCATTAAGATTTATTTGCCAAGGTGTTATTTGATCTCTTCAGTGTTTATATATTTTGATATAGATTGATGTTTTATAATTGTACCTCTGAGTGATTGCCTTAGTCTCTACTAGGAGTCCCAGCAGGAGCCCTCGGAAGAGTTTGAGCAGGAGCCCAAAAAGGAGCTTGAGCAGGAGCCAGAGTGAGAGTCCTCGGAGGATCTTGAGCAGGAGCCTGAGCAGAAGCCCCAGAAGGGTATTGAGTAGAAGTCCTCGAATGAGTTTGAGTAGGAGCCCAAGTGTGATAGCTCGCAGGCATTTAAGCAGAAGCCCAAGTGTGGTCACTCGTAGGCCTTTAAGCCGGAGTCCACGAAGGAGTTTGAGTAGACATTCACGGCAAAACCTAGCCCAAAGTCCCCCGAAAAGTCGAAGCAGTCCTCCAAGCAGAAGGTTGTCAAGAAGTCGTAGTCCTGTTGTTGATAAGAGTACACTTCCCCCTCCTAATCAAAGTCAGACTACAGCAAGAAGTCCTAGCCCAGAGGGCACACCTAAACGCGTGCGAAGAGGTCGTGGGTTCAGCCAGCGTTACTCTTATGCTCGTCGTTATCGAACTCCTTCTCCACGACCGCTCTCCCCCAAGGTCTCATCGCGTCAGTGA___AAGGAGTATTCCTGAAAGGGACAGATATTCAAGTTATAGGAGTTACTCTGAGCGCTCTCCAGCAAGACATTACAGAAACCCACCAAGAGGCAGGACTCCTCCAAGGTACAGGAGGAGCAGGAGTCGAAGCATGAGTTATAGCCCTGTAGCCTATCGGAACCGGAGAAGAAATCGAAGTCCCAGCCGCAGTCGTAGTCCTGCGGATGAGCGTCCTCGTGTCAGTGATCAGTTGCGCTCTCGTCTTGGTCCACGAGATTCATACGAAAGTAGAGGAAGGAGAGGCCGGTCCCCCTCAAGAAGCAGAAGCTCTTCTATGTCAAGATCGTCCGAGAGCTTGCCTGCGGACAATCGGCGCACTGCTTCTAGTGATAAGCATAAATCAGTAAATTCCCCCAGGGGACAGCGGTCACCAGCAGCTTCACTTAGCAAATCGATGTCTCGAAGCCGAACACCACCAGGAAATGGGAACCTCGTCTCATATGGGGATGGAAGTCCTGATTCACGTTCCAAGTAATTATGTAGTATGTAGAAGTAGAACTCATGGTCTACTTTAGAAATGTAAAAGAAAGGTTAGGCAATTCCAGGCTTTATTGATGTGAACTGAGTAGATTTTTCCATGTTGAATTTTCCTTGAAACATTGCAAATAGTGGGCATTGTAGTAACTGACAATCTTATAATCCTTGGTTATATAGTCGTAATCCAGATTGTC

Fln Alignment:

AllPine_a_rep_c110651___PPPNQSQTTARSPSPEGTPKRVRRGRGFSQRYSYARRYRTPSP
F6H3U3________________PASDRSRTVSRSPSPDGSPKRIRRGRGFSERYSYARRYRTPSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain