SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143319

Length: 762 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene143319 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Variant of histone H1 n=1 Tax=Lilium longiflorum RepID=Q9ST40_LILLO	-	-	3.0e-16	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Histone H1	-	-	0.0	-

Source	Gene names
Sma3	AT2G30620; At1g06760; At2g30620; CHLREDRAFT_168461; CHLREDRAFT_58; F4H5.15; GSVIVT00002167001; GSVIVT00020134001; GSVIVT00023870001; H0616A11.1; H1; H1-II; H1C12; H1e; H1f; HON1; HON1501; HON1503; HON1504; HON2; HON901; HON902; HON903; HON904; His1; LOC_O

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Histone H5	IPR005819	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G06760.1	winged-helix DNA-binding transcription factor family protein chr1:2076687-2077616 REVERSE LENGTH=274	4.0e-14	61%
RefSeq	Arabidopsis thaliana	NP_001189643.1	histone H1.2 [Arabidopsis thaliana]	3.0e-14	60%
RefSeq	Populus trichocarpa	XP_002315727.1	histone H1 [Populus trichocarpa]	3.0e-17	61%

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
412	25			75	0.996473
414			75	25	0.996473
415	75	25			0.996473
416	75		25		0.996473
417		75		25	0.996473
656	33		66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain