SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143311

Length: 515 nt

UniGene Fasta

>sp_v3.0_unigene143311
TTTGTTTTAAGGTTTGGTAGGGTTTTGATCCTGAGGTTGTTTCAGGGTTTGGTATAGGCAATAGCAGCAGCAGAGCAATGGGCTCTTCCAAAGCCGCGGAAAGGAACTCGTGGAGCTTTTTGAGAAGGTGCAGAAGGCGGCGGACAAAGCCATTACAAATGAGGCAGAGGAGCAACGCTGTCTGGATGCCCTTAAAGCCCTCCGGGCTGTACCTGTAACAATGAGTGTTCTTGTTTCAACTCAGGTCTTATTCCTACCTTGTCATTTCAAAGTGCCCATTATCTGCTTACGTCCATTGATGACAACTCCAAACAAACTTGGGTCTACTTTTAAAGAACAAAAGTGAGGCTTTTGACACTTTTCTTGAAGCAATCTGGAAATGTTTATCAAATGTATGCAGAGAGTCAGAGACATAATGGTGTTGAATATGTCAACCTCAAATTTGAAGACTATTCTCCACTGATTGCTTTCACTTGCTACATATGGTGCTCTACTGTCCACAACAAAATGATCCT

Ace file of the UniGene sp_v3.0_unigene143311

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	Gene names
Sma3	GSVIVT00029469001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	-
Sma3	transcription elongation regulator activity	GO:0003711	Molecular Function	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription elongation, DNA-dependent	GO:0006354	Biological Process	-
Sma3	regulation of transcription from RNA polymerase II promoter	GO:0006357	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, TFIIS-type	IPR001222	-	-
Sma3	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	IPR003617	-	-
Sma3	Transcription elongation factor S-II, central domain	IPR003618	-	-
Sma3	Transcription elongation factor, TFIIS	IPR006289	-	-
Sma3		IPR010990	-	-
Sma3		IPR014765	-	-
Sma3	Transcription elongation factor, IIS	IPR016492	-	-
Sma3	Transcription elongation factor S-IIM	IPR017890	-	-
Sma3	Transcription factor IIS, N-terminal	IPR017923	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT74

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 182 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 94 - 328

Fln protein: QQQSNGLFQSRGKELVELFEKVQKAADKAITNEAEEQRCLDALKALRAVPVTMSVLVSTQVLFLPCHFKVPIICLRPLMTTPNKLGSTFKEQK*

Protein Length: 95

Fln nts: TTTGTTTTAAGGTTTGGTAGGGTTTTGATCCTGAGGTTGTTTCAGGGTTTGGTATAGGCAATAGCAGCAGCAGAGCAATGGGCTCTTCCAAAGCCGCGGAAAGGAACTCGTGGAGCTTTTTGAGAAGGTGCAGAAGGCGGCGGACAAAGCCATTACAAATGAGGCAGAGGAGCAACGCTGTCTGGATGCCCTTAAAGCCCTCCGGGCTGTACCTGTAACAATGAGTGTTCTTGTTTCAACTCAGGTCTTATTCCTACCTTGTCATTTCAAAGTGCCCATTATCTGCTTACGTCCATTGATGACAACTCCAAACAAACTTGGGTCTACTTTTAAAGAACAAAAGTGAGGCTTTTGACACTTTTCTTGAAGCAATCTGGAAATGTTTATCAAATGTATGCAGAGAGTCAGAGACATAATGGTGTTGAATATGTCAACCTCAAATTTGAAGACTATTCTCCACTGATTGCTTTCACTTGCTACATATGGTGCTCTACTGTCCACAACAAAATGATCCT

Fln Alignment:

AllPine_a_rep_c110488___KELVELFEKVQKAADKAITNEAEEQRCLDALKALRAVPVTMSVLVSTQV
C0PT74________________KELLELFEKVKKAADKAITNEAEEQRCLDALKALRAVPVTMGVLVSTQV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
329		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain