SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143310

Length: 823 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene143310 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Carbonic anhydrase, putative n=1 Tax=Ricinus communis RepID=B9STU9_RICCO	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Carbonic anhydrase, putative	-	-	9.127e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Carbonate dehydratase.	EC:4.2.1.1	-	1.26e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Nitrogen metabolism	00910		1.26e-12	%

Source	Gene names
Sma3	A2; A3; ATJ; ATJ2; ATJ3; At1g08065; At1g08080; At3g44110; At5g22060; At5g56330; B38; DB3L; DB3S; DIOA-1; DNAJ1; F26G5.60; GSVIVT00000607001; GSVIVT00002640001; GSVIVT00019136001; GSVIVT00025654001; GSVIVT00037272001; J3; LDJ2; LOC_Os03g44620; LOC_Os03g573

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	monodehydroascorbate reductase (NADH) activity	GO:0016656	Molecular Function	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	response to oxygen radical	GO:0000305	Biological Process	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	one-carbon metabolic process	GO:0006730	Biological Process	-
Sma3	regulation of pH	GO:0006885	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Alpha carbonic anhydrase	IPR001148	-	-
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3		IPR015609	-	-
Sma3		IPR017909	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Carbonic anhydrase, alpha-class, conserved site	IPR018338	-	-
Sma3		IPR018340	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002323272.1	predicted protein, partial [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
594		33		66	0.997476
655			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain