SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143297

Length: 846 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene143297 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Early response to drought 3 (Fragment) n=8 Tax=Pinus RepID=B2CBY9_PINRA	-	-	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Sma3	Early response to drought 3	-	-	-

Source	Gene names
Sma3	erd3;

Source	InterPros	Term	Type	e value	Identity
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G31850.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr1:11431165-11433443 FORWARD LENGTH=603	61%
RefSeq	Arabidopsis thaliana	NP_849736.1	putative methyltransferase PMT20 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002304375.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
401		25		75	0.996473
402	25		75		0.996473
426	33			66	0.997464
427		33		66	0.997464
428	33		66		0.997464
430	66			33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain