SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143200

Length: 594 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene143200 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Anther-specific proline-rich protein APG	-	-	9.382e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Carboxylic ester hydrolases.	EC:3.1.1.-	-	2.778e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053	2.778e-09	%
Sma3	Bisphenol degradation	00363	2.778e-09	%
Sma3	Glycerophospholipid metabolism	00564	2.778e-09	%
Sma3	Toluene degradation	00623	2.778e-09	%
Sma3	Aminobenzoate degradation	00627	2.778e-09	%
Sma3	Retinol metabolism	00830	2.778e-09	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	2.778e-09	%

Source	Gene names
Sma3	AEL; At3g04290; At4g28780; At5g18430; At5g33370; F16A16.110; F19N2.90; F20L16.150; GSVIVT00015966001; GSVIVT00026719001; GSVIVT00026720001; GSVIVT00026725001; GSVIVT00028445001; LOC_Os10g32580; LTL1; Lip; OJ1014_H03.11; OSIGBa0101P20.1; OSIGBa0157A06.8; O

Source	GOs	Term	Type	Identity
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to lithium ion	GO:0010226	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDSL	IPR001087	-	0.0	-
Sma3	Lipase, GDSL, active site	IPR008265	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G33370.1	GDSL-like Lipase/Acylhydrolase superfamily protein chr5:12602773-12604670 REVERSE LENGTH=366	61%
RefSeq	Arabidopsis thaliana	NP_001078631.1	GDSL esterase/lipase [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002319124.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
295		75		25	0.996473
297	50		50		1.0
304		50		50	1.0
327		50		50	1.0
334			50	50	1.0
335			50	50	1.0
378	33		66		0.997467
382	33		66		0.997459
383		33		66	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain