SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143197

Length: 1113 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene143197

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1-deoxy-D-xylulose 5-phosphate synthase type II n=3 Tax=Pinaceae RepID=A7LA01_PICAB	-	-	0.0	90%
FL-Next	tr=Putative 1-D-deoxyxylulose 5-phosphate synthase type 2; Pinus densiflora (Japanese red pine).	-	-	0.0	100%
Sma3	1-deoxy-D-xylulose-5-phosphate synthase	-	-	1.254e-36	-

Source	ECs	Term	Type	e value	Identity
Sma3	1-deoxy-D-xylulose-5-phosphate synthase.	EC:2.2.1.7	-	9.29762e-42	-

Source	KEGGs	Term	e value	Identity
Sma3	Terpenoid backbone biosynthesis	00900	9.29762e-42	%
Sma3	Biosynthesis of terpenoids and steroids	01062	9.29762e-42	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	9.29762e-42	%
Sma3	Biosynthesis of plant hormones	01070	9.29762e-42	%
Sma3	Metabolic pathways	01100	9.29762e-42	%
Sma3	Biosynthesis of secondary metabolites	01110	9.29762e-42	%

Source	Gene names
Sma3	At3g21500; At4g15560; At5g11380; CHLREDRAFT_196568; CLA1; DEF; DXPS; DXS; DXS1; DXS2; DXS2A; DXS2B; Dxs; Dxs1; F2I11_270; GSVIVT00009953001; GSVIVT00011627001; GSVIVT00012707001; GSVIVT00019845001; GSVIVT00031403001; GSVIVT00031458001; GSVIVT00031462001;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	1-deoxy-D-xylulose-5-phosphate synthase activity	GO:0008661	Molecular Function	-
Sma3	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	GO:0030604	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	thiamine biosynthetic process	GO:0009228	Biological Process	-
Sma3	chlorophyll biosynthetic process	GO:0015995	Biological Process	-
Sma3	terpenoid biosynthetic process	GO:0016114	Biological Process	-
Sma3	isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	GO:0019288	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Deoxyxylulose-5-phosphate synthase	IPR005477	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G15560.1	CLA1, DEF, CLA, DXS, DXPS2 Deoxyxylulose-5-phosphate synthase chr4:8884218-8887254 FORWARD LENGTH=717	74%
RefSeq	Arabidopsis thaliana	NP_193291.1	Deoxyxylulose-5-phosphate synthase [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002303416.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B9U4U0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 296 aas, your sequence is shorter than subject: 370 - 740

Fln protein: NHIN*FKT*TKS**YDYKKNISIDFRYLKCYCSRLNI*HLSHF*L*NKRSICLPPIRNYFND*L*DILYSR*IVKGIWARMHLTRLWKWVQSYPHKILTGRRSKMHTIRQTSGLAGFPKRDESKYDAFGAGHSSTSISAGLGMAVGRDLLKKKNHVVAVIGDGAMTAGQAYEAMNNSGYLESNLIIILNDNKQVSLPTATLDGAAPPVGALTRALTKLQSSKKLRKLREAAKGLTKQIGGPTHEVASKVDKYARGLISPAGSSLFDELGLYYIGPVDGHNIEDMVTILEKIKSMPATGPVLIHLVTEKGKGYPPAEEAADKLHGVVKFDPVTGKQFKSKSSVLSYTQYFAEALIAEAEVDSKIVGIHAAM

Protein Length: 371

Fln nts: TAAATCATATTAATTAGTTCAAAACCTAGACCAAATCTTAATAATATGATTATAAAAAAAACATCTCTATAGATTTTAGATATTTGAAATGTTATTGTTCAAGACTGAATATATAGCATCTTTCTCATTTCTAGCTATAAAATAAAAGATCAATCTGCCTACCGCCAATAAGAAATTATTTCAATGATTAATTGTAAGATATTTTGTATTCTAGATGAATTGTAAAAGGGATTTGGGCTAGAATGCATTTAACCAGGCTGTGGAAATGGGTGCAGTCATATCCACACAAGATTTTGACAGGGAGAAGATCCAAAATGCATACAATCAGACAGACCTCTGGTTTGGCCGGATTTCCCAAACGGGACGAAAGCAAATACGATGCTTTTGGCGCTGGACATAGTTCTACCAGTATCTCCGCTGGACTCGGTATGGCAGTTGGGAGAGATTTACTGAAGAAAAAAAACCATGTGGTGGCCGTGATTGGGGATGGAGCCATGACAGCAGGACAAGCTTACGAGGCTATGAATAATTCAGGATATCTGGAATCCAATCTTATCATAATTCTTAATGATAATAAGCAAGTTTCGCTGCCAACTGCCACACTAGACGGAGCTGCGCCGCCCGTAGGAGCACTTACCAGGGCTCTCACAAAGCTCCAGTCCAGCAAAAAACTTCGAAAACTCAGAGAAGCCGCCAAGGGTCTCACGAAGCAGATAGGTGGGCCAACTCATGAAGTGGCATCGAAAGTTGATAAGTATGCAAGGGGTCTTATCAGCCCAGCAGGTTCCTCGTTGTTTGACGAGCTAGGTCTTTATTACATTGGACCTGTGGATGGGCACAACATTGAAGACATGGTGACAATTTTAGAGAAGATTAAAAGCATGCCGGCTACGGGACCCGTACTGATTCACTTGGTGACAGAGAAAGGAAAGGGTTACCCTCCAGCGGAGGAAGCTGCAGACAAATTACATGGTGTGGTGAAGTTCGATCCAGTTACGGGCAAACAATTCAAGTCAAAAAGTTCCGTTCTGAGCTATACACAGTACTTTGCAGAAGCTCTGATAGCAGAAGCGGAAGTAGACAGCAAAATTGTGGGTATTCATGCTGCCATGG

Fln Alignment:

AllPine_a_rep_c109909___QSYPHKILTGRRSKMHTIRQTSGLAGFPKRDESKYDAFGAGHSSTSISAGLGMAVGRDLLKKKNHVVAVIGDGAMTAGQAYEAMNNSGYLESNLIIILNDNKQVSLPTATLDGAAPPVGALTRAXXXXXXXXXXXXXXEAAKGLTKQIGGPTHEVASKVDKYARGLISPAGSSLFDELGLYYIGPVDGHNIEDMVTILEKIKSMPATGPVLIHLVTEKGKGYPPAEEAADKLHGVVKFDPVTGKQFKSKSSVLSYTQYFAEALIAEAEVDSKIVGIHAAM
B9U4U0________________QSYPHKILTGRRSKMHTIRQTSGLAGFPKRDESKYDAFGAGHSSTSISAGLGMAVGRDLLKKKNHVVAVIGDGAMTAGQAYEAMNNSGYLESNLIIILNDNKQVSLPTATLDGAAPPVGALTRALTKLQSSKKLRKLREAAKGLTKQIGGPTHEVASKVDKYARGLISPAGSSLFDELGLYYIGPVDGHNIEDMVTILEKIKSMPATGPVLIHLVTEKGKGYPPAEEAADKLHGVVKFDPVTGKQFKSKSSVLSYTQYFAEALIAEAEVDSKIVGIHAAM

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
556	20			80	0.995495
560		80		20	0.995495
749	80		20		1.0
942	12	87			0.992554
944	12	87			0.992554
946		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain