SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143147

Length: 761 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene143147

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Sucrose synthase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sucrose synthase.	EC:2.4.1.13	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	At1g73370; At3g43190; At4g02280; At5g20830; At5g49190; B1056G08.118; CSS1; CitSUS1; CitSUS1-2; CitSUSA; CitSUSA-2; F7K15_40; GSVIVT00000882001; GSVIVT00016378001; GSVIVT00023450001; GSVIVT00028036001; GSVIVT00033041001; H0211A12.6; K21P3.6; LOC_Os03g22120

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sucrose synthase activity	GO:0016157	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	sucrose-phosphate synthase activity	GO:0046524	Molecular Function	-
Sma3	response to hypoxia	GO:0001666	Biological Process	-
Sma3	sucrose metabolic process	GO:0005985	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to flooding	GO:0009413	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Sucrose synthase, plant/cyanobacteria	IPR012820	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02280.1	SUS3, ATSUS3 sucrose synthase 3 chr4:995166-998719 FORWARD LENGTH=809	74%
RefSeq	Arabidopsis thaliana	NP_192137.1	sucrose synthase 3 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002302727.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
214		12		87	0.992554
217		87		12	0.992554
352	16		83		0.994512
353		16	83		0.994512
354	16	83			0.994512
356		16		83	0.994512
365	20		80		0.995493
377	75	25			0.996473
381	25		75		0.996473
382		25		75	0.996473
383	25		75		0.996473
384			75	25	0.996473
440	25		50	25	0.995544
441		25	50	25	0.995535
442	25			50	0.995533
443			75	25	0.996473
452		66		33	0.997452
525		66		33	0.997452
545		66		33	0.997452
550	33		66		0.997452
570		33		66	0.997452
652	66		33		0.997476

SSRs (tot: 1)

Start position	End position	Sequence	Length
127	138	TTG TTG TTG TTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain