SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143144

Length: 1019 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene143144

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] gb\|AAV92353.1\| alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] gb\|AAV92354.1\| alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] gb\|AAV92355.1\| alpha tubulin 1 [Pseudotsuga menziesii var. m	-	-	0.0	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	99%
Sma3	Alpha-tubulin	-	-	1.242e-28	-

Source	Gene names
Sma3	AT1; AT4G14960; ATUB3; ATub4; At1g04820; At1g64740; At4g14960; BYtuba; F13O11.5; GSVIVT00010650001; GSVIVT00015032001; GSVIVT00020930001; GSVIVT00024805001; GSVIVT00038615001; LOC_Os03g11970; LOC_Os03g51600; MtrDRAFT_AC170580g1v1; OSJNBa0013A09.14; OSJNBb

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G50010.1	TUA2 tubulin alpha-2 chain chr1:18517737-18519729 FORWARD LENGTH=450	99%
RefSeq	Arabidopsis thaliana	NP_175423.1	tubulin alpha-2/alpha-4 chain [Arabidopsis thaliana]	99%
RefSeq	Populus trichocarpa	XP_002313194.1	tubulin alpha-5 chain [Populus trichocarpa]	99%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRI6

Fln msg: Separated hits, possible frame ERROR between 685 and 703, and overlapping frame ERROR between 834 and 819, Unexpected STOP codon at 3' end. Distance to subject end: 35 aas, your sequence is shorter than subject: 261 - 319

Fln protein: MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYxxxxxxxTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRxxxxxxxxYTNLNRCPRRRSRQGSESRVHDFQLDQCCRGVLENRS*

Protein Length: 262

Fln nts: GGGTTAAAGGAGGACGACGAGCTGAGCTCTTCGAATACAGCAGTAACAGGCGTGGTGGTATTGCAGGAGGCGTCTTTGCAAACGCCTTCTTCATCCGATTTCCTACGTTCGCCGTTTCTTCGCAGTTTTTCTCTTTTTTTAGGGTTTTTTTCCTTCGTCACCAGCGAAA_-_ATGAGAGAGTGCATCTCGATCCACATTGGACAGGCCGGTATCCAGGTTGGAAATGCTTGCTGGGAACTTTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAGATGCCCAGCGACAAAACTGTCGGTGGCGGAGACGATGCATTCAACACTTTCTTCAGCGAAACTGGAGCCGGAAAGCATGTTCCCCGCGTCTTTGTAGATCTGGAGCCGACTGTCATTGACGAGGTACGGACTGGTACTTACCGTCAGCTTTTCCATCCTGAACAGCTTATCAGCGGCAAGGAAGATGCGGCCAACAACTTTGCCCGTGGTCATTACACCATTGGCAAGGAAATTGTGGACCTCTGCCTGGACCGTATTCGGAAGCTGGCTGACAACTGCACGGGTCTTCAAGGATTCCTCGTCTTCAACGCAGTTGGTGGAGGAACTGGTTCTGGTCTTGGTTCTCTTCTACTGGAACGTCTTTCAGTGGACTACGGCAAAAAATCCAAACTTGGATTCACTGTGTATCCxxxxxxxxxxxxxxxxxxAACTTCGGTCGTTGAGCCGTACAACAGCGTTCTCTCCACGCATTCTCTTCTGGAACACACCGATGTGGCCGTTCTCCTCGATAATGAAGCTATTTACGATATTTGCCGTCGTCTxxxxxxxxxxxxxxxxxxxxxATACACAAATCTGAACCGTTGTCCCCGGAGGCGATCTCGCCAAGGTTCAGAGAGCCGTGTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAGCGAGCATTTGTTCATTGGTATGTGGGCGAGGGTATGGAAGAGACATT

Fln Alignment:

AllPine_a_rep_c109636___MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPR-VFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPxxxxxxTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRLWxxxxxTYTNLNR
C0PRI6________________MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPxxxxxxTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLxxxxxTYTNLNR

SNPs (tot: 4)

Position	A %	C %	G %	Probability
477	33	66		0.997452
478	33	66		0.997452
705	33	33	33	0.997702
708		66	33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain