SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143120

Length: 249 nt

UniGene Fasta

>sp_v3.0_unigene143120
CGTCGTGACCTTGGCTGTCACTCAGTTTTTGATGTGAGCTTTAATAAGCTAGTTGGGTCTCTGCCAGACAGCATTGGGCAGATGGTCAGCTTGGAACAATTGGATGTTGCCCACAATATGTTAACTGGAAAGATCCCTCAGAGCATCTGTGCACTGCCCAATTGGATAATTTTACGACTCCTACAACTTCTTTACCGGGGGAGCACCCAATTGCTTGGCTATTCCTAGCAGAGGAGCTACCTTTGATGA

Ace file of the UniGene sp_v3.0_unigene143120

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat extensin-like protein 3 [Arabidopsis thaliana] sp\|Q9T0K5.1\|LRX3_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 3; Short=AtLRX3; Short=LRR/EXTENSIN3; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur	-	-	2.0e-16	76%
FL-Next	tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	42%
Sma3	Extensin-like protein	-	-	1.634e-12	-

Source	Gene names
Sma3	AT4g13340; AT4g18670; At3g22800; At3g24480; At4g13340; At4g18670; F28A21.80; GSVIVT00016771001; GSVIVT00020038001; GSVIVT00033788001; NpLRX1; NtLRX1; Os07g0176500; OsI_25092; OsJ_23297; P0534H07.20; POPTRDRAFT_1080582; POPTRDRAFT_1105891; POPTRDRAFT_11064

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	cell morphogenesis involved in differentiation	GO:0000904	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S3Ae	IPR001593	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Repetitive proline-rich cell wall protein repeat	IPR003883	-	-
Sma3	Extensin repeat	IPR006706	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Ribosomal protein S3Ae, conserved site	IPR018281	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G13340.1	Leucine-rich repeat (LRR) family protein chr4:7758610-7760892 FORWARD LENGTH=760	2.0e-18	76%
RefSeq	Arabidopsis thaliana	NP_193070.1	leucine-rich repeat extensin-like protein 3 [Arabidopsis thaliana]	2.0e-18	76%
RefSeq	Populus trichocarpa	XP_002331736.1	predicted protein, partial [Populus trichocarpa]	1.0e-18	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: I4DUG2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 521 aas, your sequence is shorter than subject: 76 - 743

Fln protein: RRDLGCHSVFDVSFNKLVGSLPDSIGQMVSLEQLDVAHNMLTGKIPQSICALPNWIILRLLQLLYRGSTQLLGYS*

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTGATGTGAGCTTTAATAAGCTAGTTGGGTCTCTGCCAGACAGCATTGGGCAGATGGTCAGCTTGGAACAATTGGATGTTGCCCACAATATGTTAACTGGAAAGATCCCTCAGAGCATCTGTGCACTGCCCAATTGGATAATTTTACGACTCCTACAACTTCTTTACCGGGGGAGCACCCAATTGCTTGGCTATTCCTAGCAGAGGAGCTACCTTTGATGA

Fln Alignment:

AllPine_a_rep_c109528___CHSVFDV--SFNKLVGSLPDSIGQMVSLEQLDVAHNMLTGKIPQSICALPNWIILRL
I4DUG2________________CRSLYDLALSFNQLQGNIPPGLGSLTSLKNLYLGRNSLTGKIPRSFKNLSSLVGLYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain