SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143069

Length: 294 nt

UniGene Fasta

>sp_v3.0_unigene143069
CGTCGTGACCTTGGCTGTCACTCATTTTTTTCCAATCATTCATCATGATATCACAAGGGAGATTCCTACTCATCTGCAGCGGTTGCAGTATACCGCTTTTGCCACCTGGCTAGGCATTGTTTTATGTCTTGTATGGAACTTTGTTGCGGTGACAATTGCCTGGATTAGAGGATATGCTATCATCTATGCTATTGCGGGATGCCCAGGAGCTTATGTTTTGTGGTATCGGCCTCTGTATCGTGCTATGAGGACTGAAAGTGCAATAAAGTTTGGTCGTCTTTTTCCTGTTTTACT

Ace file of the UniGene sp_v3.0_unigene143069

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Secretory carrier membrane protein n=1 Tax=Elaeis guineensis RepID=B3TLU6_ELAGV	-	-	2.0e-21	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	SC3 protein	-	-	7.166e-26	-

Source	Gene names
Sma3	AT1G32050; At1g03550; At1g11180; At1g32050; At1g61250; At2g20840; F11P17.4; F21B7.17; F5H14.19; GSVIVT00004644001; GSVIVT00012405001; GSVIVT00015619001; GSVIVT00026006001; LOC_Os01g57220; LOC_Os02g47010; LOC_Os03g38590; LOC_Os03g38600; LOC_Os04g50890; LOC

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	SCAMP	IPR007273	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G32050.1	SCAMP family protein chr1:11528616-11530974 FORWARD LENGTH=264	6.0e-26	63%
RefSeq	Arabidopsis thaliana	NP_174485.1	secretory carrier-associated membrane protein 4 [Arabidopsis thaliana]	8.0e-26	63%
RefSeq	Populus trichocarpa	XP_002326571.1	predicted protein [Populus trichocarpa]	3.0e-27	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEI6

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 97 - 311

Fln protein: VVTLAVTHFFPIIHHDITREIPTHLQRLQYTAFATWLGIVLCLVWNFVAVTIAWIRGYAIIYAIAGCPGAYVLWYRPLYRAMRTESAIKFGRLFPVL

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTCCAATCATTCATCATGATATCACAAGGGAGATTCCTACTCATCTGCAGCGGTTGCAGTATACCGCTTTTGCCACCTGGCTAGGCATTGTTTTATGTCTTGTATGGAACTTTGTTGCGGTGACAATTGCCTGGATTAGAGGATATGCTATCATCTATGCTATTGCGGGATGCCCAGGAGCTTATGTTTTGTGGTATCGGCCTCTGTATCGTGCTATGAGGACTGAAAGTGCAATAAAGTTTGGTCGTCTTTTTCCTGTTTTACT

Fln Alignment:

AllPine_a_rep_c109407___FFPIIHHDITREIPTHLQRLQYTAFATWLGIVLCLVWNFVAVT-------XXXXXXXXXXXXXXXXXXXXVLWYRPLYRAMRTESAIKFGRLF
D5AEI6________________FFPIIHHDITREIPTHLQRLQYTAFSTWLGIVLCLVWNFVAVTIAWIRGYGVKIWFLAIIYAIAGCPGAYVLWYRPLYRAMRTESAIKFGRFF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain