SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142985

Length: 373 nt

UniGene Fasta

>sp_v3.0_unigene142985
CGTCGTGACCTTGGCTGTCACTCAATTCGTTCGTTCGCATTCACTTCAGTGAATAAGCAGCTTTATGCGTCCTGAGTTCAAACCCTTGTTTTAAGGATTACCCCCAACAATGACTAGACCCTCGCAAAACCATACTCGTTACAACAGACGCGGAAACCGCTCACTAAAGTCGCGGCAGTTCAGAGGAATCCGAATGAGAAAATGGGGGTCATGGGTGTCGGAAATTCGAATGCCCCATTCTACTCGCAGAATTTGGCTGGGTTCCTATGACTCCCCGCAAAAGGCTGCCCGCGCCTACGATTTTGCCGTGTATTGTCTGAGAGGAGCAAAAGCCAAGTTCAATTTTCCCCACTCCTTACCGGAAATGCCCTGC

Ace file of the UniGene sp_v3.0_unigene142985

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=A9PLA4_POPTR	-	-	2.0e-21	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	AP2/ERF domain-containing transcription factor	-	-	6.65e-28	-

Source	Gene names
Sma3	AP22.2; At1g19210; At1g21910; At1g74930; At2g23340; At3g50260; At4g31060; At4g36900; At5g11190; At5g21960; At5g25390; At5g67190; B1172G12.12; B1172G12.14; B1172G12.5; B1172G12.8; C-EF5; C-EF8; C7A10.460; DBP; DREB; DREB1; DREB32; DREB33; DREB34; DREB35; D

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3		IPR001476	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Chaperonin Cpn10, conserved site	IPR018369	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G19210.1	Integrase-type DNA-binding superfamily protein chr1:6626973-6627530 REVERSE LENGTH=185	7.0e-28	62%
RefSeq	Arabidopsis thaliana	NP_173355.3	ethylene-responsive transcription factor ERF017 [Arabidopsis thaliana]	9.0e-28	62%
RefSeq	Populus trichocarpa	XP_002326297.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	8.0e-29	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQM1

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 88 - 177

Fln protein: MTRPSQNHTRYNRRGNRSLKSRQFRGIRMRKWGSWVSEIRMPHSTRRIWLGSYDSPQKAARAYDFAVYCLRGAKAKFNFPHSLPEMPC

Protein Length: 89

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCGTTCGTTCGCATTCACTTCAGTGAATAAGCAGCTTTATGCGTCCTGAGTTCAAACCCTTGTTTTAAGGATTACCCCCAACA_-_ATGACTAGACCCTCGCAAAACCATACTCGTTACAACAGACGCGGAAACCGCTCACTAAAGTCGCGGCAGTTCAGAGGAATCCGAATGAGAAAATGGGGGTCATGGGTGTCGGAAATTCGAATGCCCCATTCTACTCGCAGAATTTGGCTGGGTTCCTATGACTCCCCGCAAAAGGCTGCCCGCGCCTACGATTTTGCCGTGTATTGTCTGAGAGGAGCAAAAGCCAAGTTCAATTTTCCCCACTCCTTACCGGAAATGCCCTGC

Fln Alignment:

AllPine_a_rep_c109157___MTRPSQNHTRYNRRGNRSLKSRQFRGIRMRKWGSWVSEIRMPHSTRRIWLGSYDSPQKAARAYDFAVYCLRGAKAKFNFPHSLPEMPC
A9NQM1________________MTKPSPNQNSHSRPETRSLKSRQFKGIRMRKWGKWVSEIRMPYCTGRIWLGSYDTPEKAARAYDFAAFCLRGSKAKLNFPLFTPKIPC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain