SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142895

Length: 539 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene142895
TTTAGTTTCTGGAGTTTTTCAAAGAATATAAAACGAGATTGATAGGGTTGGTGGGAGATGAACGTGGCGCCATGATATTGAGTGAGGCAATATATTTCATCGTCATTGGCACAAATGACTTCATTGCCAACTACTTTCTATTTCCGGATCGTTAATCTCACTTTACCATTTCACAGTACACGGATTTTCTCTTGCAGACATACGCATCTTACATTAAGGAACTATATAGTCTGAATGCGCGCAAAATTGGGTTGATCAACGTCCCTCCCTTGGGATGTCTACCTATCGAGAGAACACTGCATTACCTTGACAGGTAGACATCCCAAGGGAGGGTGTGCGGAGAAAATCAACGAGGCTGCATCTGGTTTCAATGAAGGGTTGAATGCAATAATCAAACAGCTGAAACCTGTGCTCCCTGGTCTTAAGATTGTTTCACTTGATTATTACGCTCTTATTCTAGAATTCATACAAAATCCTGGCAAAGTCGGTTTTGAGGTGACTGATAAGGGTTGTTGTGGGACTGGAGATATAGAGCTGGG

Ace file of the UniGene sp_v3.0_unigene142895 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative GDSL-motif lipase/hydrolase [Arabidopsis thaliana]	-	-	1.0e-30	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%

Source	Gene names
Sma3	POPTRDRAFT_573030; RCOM_0511210;

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDSL	IPR001087	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04570.1	GDSL-like Lipase/Acylhydrolase superfamily protein chr2:1594747-1596129 FORWARD LENGTH=350	2.0e-32	47%
RefSeq	Arabidopsis thaliana	NP_178536.1	GDSL esterase/lipase [Arabidopsis thaliana]	2.0e-32	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRW6

Fln msg: Separated hits, possible frame ERROR between 296 and 316, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 45 aas, your sequence is shorter than subject: 179 - 363

Fln protein: *FLEFFKEYKTRLIGLVGDERGAMILSEAIYFIVIGTNDFIANYFLFPDR*SHFTISQYTDFLLQTYASYIKELYSLNARKIGLINVPPLGCLPIERxxxxxxxxRHPKGGCAEKINEAASGFNEGLNAIIKQLKPVLPGLKIVSLDYYALILEFIQNPGKVGFEVTDKGCCGTGDIEL

Protein Length: 180

Fln nts: TTTAGTTTCTGGAGTTTTTCAAAGAATATAAAACGAGATTGATAGGGTTGGTGGGAGATGAACGTGGCGCCATGATATTGAGTGAGGCAATATATTTCATCGTCATTGGCACAAATGACTTCATTGCCAACTACTTTCTATTTCCGGATCGTTAATCTCACTTTACCATTTCACAGTACACGGATTTTCTCTTGCAGACATACGCATCTTACATTAAGGAACTATATAGTCTGAATGCGCGCAAAATTGGGTTGATCAACGTCCCTCCCTTGGGATGTCTACCTATCGAGAGAACxxxxxxxxxxxxxxxxxxxxxTAGACATCCCAAGGGAGGGTGTGCGGAGAAAATCAACGAGGCTGCATCTGGTTTCAATGAAGGGTTGAATGCAATAATCAAACAGCTGAAACCTGTGCTCCCTGGTCTTAAGATTGTTTCACTTGATTATTACGCTCTTATTCTAGAATTCATACAAAATCCTGGCAAAGTCGGTTTTGAGGTGACTGATAAGGGTTGTTGTGGGACTGGAGATATAGAGCTGGG

Fln Alignment:

AllPine_a_rep_c108895___LEFFKEYKTRLIGLVGDERGAMILSEAIYFIVIGTNDFIANYFLFPDR*SHFTISQYTDFLLQTYASYIKELYSLNARKIGLINVPPLGCLPIERTxxxxxxxRHPKGGCAEKINEAASGFNEGLNAIIKQLKPVLPGLKIVSLDYYALILEFIQNPGKVGFEVTDKGCCGTGDIE
C0PRW6________________VEYFKEYKTRLIGLVGDERANMILSEAIYFIVIGTNDFAVNYYNYPFRSAHYTVSQYTDFLLQIYASHIKELYSLNARKIGLINLPPLGCLPIKRSxxxxxxxKRSKGECVEEINQAASGFNEGMNAMIEHLKPVLPGLKIVSLDYHAVILDFIQNPGKFGFQVTANGCCFATDTE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain