SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142804

Length: 410 nt

UniGene Fasta

>sp_v3.0_unigene142804
TTCCTTCTAAGTCTATTCTTGTCCTATTTGTATTCGTTTATTACTAGTAGGTCTTCATCTCGTGAGCTTGGGTTTCACTGTTTCTGCTTACGTGGGCATGGTGTGTGAGACATTAAAAAATTCTATTCCTAAAGCTGTGGTATATTGTCAAGTTCGTGAGGCCAAGAACTCTTTGCTCAACCACTTCTATACTCAAGTGGGCAGGAAGGAACTTGCAGCTTTGTTAGATGAAGATCCAGCCTTGATGGAACGTAGGGAAGGATGTGCTAAAAGGCTTGAGCTGTATAAAGCTGCACGGGATGAAATAGATGCTGTGTCTTGGGCAAGATCATAATGTAACTATCAGTGTAACCTGAGTTGTCAAACCCATTCCTCTATTCAGATACAATGTAACTATCATGTACTAAGAG

Ace file of the UniGene sp_v3.0_unigene142804

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dynamin-like protein C [Arabidopsis thaliana]	-	-	8.0e-22	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Dynamin, putative	-	-	2.215e-17	-

Source	Gene names
Sma3	ADL1; ADL1A; ADL1B; ADL1C; ADL1D; ADL1E; ADL4; ADL5; AG68; At1g14830; At2g44590; At3g60190; At3g61760; At5g42080; B1130E07.11; B1331F11.31; DLP1; DLP2; DLP3; DRP1A; DRP1B; DRP1C; DRP1D; DRP1E; F10B6.23; F15G16.150; F16B22.8; GSVIVT00006741001; GSVIVT00008

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell cortex	GO:0005938	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	mitochondrial fission	GO:0000266	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	trichome branching	GO:0010091	Biological Process	-
Sma3	pollen maturation	GO:0010152	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G14830.1	ADL1C, ADL5, DRP1C, DL1C DYNAMIN-like 1C chr1:5107699-5111470 REVERSE LENGTH=614	9.0e-27	75%
RefSeq	Arabidopsis thaliana	NP_172936.1	dynamin-related protein 1C [Arabidopsis thaliana]	1.0e-26	75%
RefSeq	Populus trichocarpa	XP_002302482.1	predicted protein [Populus trichocarpa]	3.0e-31	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS11

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 111 - 615

Fln protein: SF*VYSCPICIRLLLVGLHLVSLGFTVSAYVGMVCETLKNSIPKAVVYCQVREAKNSLLNHFYTQVGRKELAALLDEDPALMERREGCAKRLELYKAARDEIDAVSWARS*

Protein Length: 112

Fln nts: TTCCTTCTAAGTCTATTCTTGTCCTATTTGTATTCGTTTATTACTAGTAGGTCTTCATCTCGTGAGCTTGGGTTTCACTGTTTCTGCTTACGTGGGCATGGTGTGTGAGACATTAAAAAATTCTATTCCTAAAGCTGTGGTATATTGTCAAGTTCGTGAGGCCAAGAACTCTTTGCTCAACCACTTCTATACTCAAGTGGGCAGGAAGGAACTTGCAGCTTTGTTAGATGAAGATCCAGCCTTGATGGAACGTAGGGAAGGATGTGCTAAAAGGCTTGAGCTGTATAAAGCTGCACGGGATGAAATAGATGCTGTGTCTTGGGCAAGATCATAA___TGTAACTATCAGTGTAACCTGAGTTGTCAAACCCATTCCTCTATTCAGATACAATGTAACTATCATGTACTAAGAG

Fln Alignment:

AllPine_a_rep_c108638___VSAYVGMVCETLKNSIPKAVVYCQVREAKNSLLNHFYTQVGR---KXXXXXXXXXXXXMERREGCAKRLELYKAARDEIDAVSWAR
B8LS11________________VSAYVGMVCDTLKNSIPKAVVYCQVREAKNCLLNHFYTQVGKKEGKQLLALLDEDPALMERREGCAKRLELYKSARDEIDAVSWAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain