SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142761

Length: 198 nt

UniGene Fasta

>sp_v3.0_unigene142761
CGTCGTGACCTTGGCTGTCACTCATTCTCTTTGCCCTGGTGAATGGATTGAAAAATGGAATGAACAGAGGGAATCTGGAACATTTCCTGGACCTTCTGTAATGCAGCTGGAAGGAAGCATCGTGTTGGCTTGAAATGGCTATAATTTATATCCAAATTATAGCCATTTCAAGCCAACACGATGCTTCCTTCCAGCTGC

Ace file of the UniGene sp_v3.0_unigene142761

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome c oxidase polypeptide VIb n=2 Tax=Andropogoneae RepID=B6STB2_MAIZE	-	-	2.0e-06	91%
FL-Next	tr=Cytochrome c oxidase subunit 6b; Larix kaempferi.	-	-	0.0	86%
Sma3	Cytochrome c oxidase subunit 6b	-	-	3.441e-09	-

Source	Gene names
Sma3	At5g57815; At5g57815/MTI20.5; COX6b-1; COX6b1; GSVIVT00017105001; LOC_Os03g27290; OSJNBa0017N12.7; Os03g0390400; Os07g0621600; OsI_11877; OsI_26908; OsJ_11115; OsJ_25165; P0594D10.126; RCOM_1037110;

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	0.0	-
Sma3	cytochrome-c oxidase activity	GO:0004129	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome c oxidase, subunit VIb	IPR003213	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G57815.1	Cytochrome c oxidase, subunit Vib family protein chr5:23426753-23427637 FORWARD LENGTH=78	2.0e-11	86%
RefSeq	Arabidopsis thaliana	NP_568867.1	cytochrome c oxidase subunit VIb [Arabidopsis thaliana]	3.0e-11	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C9EIK4

Fln msg: your sequence is shorter than subject: 44 - 180

Fln protein: VVTLAVTHSLCPGEWIEKWNEQRESGTFPGPSVMQLEGSIVLA*

Protein Length: 45

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTCTTTGCCCTGGTGAATGGATTGAAAAATGGAATGAACAGAGGGAATCTGGAACATTTCCTGGACCTTCTGTAATGCAGCTGGAAGGAAGCATCGTGTTGGCTTGA___AATGGCTATAATTTATATCCAAATTATAGCCATTTCAAGCCAACACGATGCTTCCTTCCAGCTGC

Fln Alignment:

AllPine_a_rep_c108510___SLCPGEWIEKWNEQRESGTFPGP
C9EIK4________________SLCPGEWIDRWNEQRENGTFPGP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain