SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142750

Length: 485 nt

UniGene Fasta

>sp_v3.0_unigene142750
CTGTTTCCAAACACATGTCTCCTTGTGGGTTGCTGCAATGATGAAGTCACTCGCAGGTATAAGGGAAAAACTGTAATGACTGAAGCTGAGCGCTATGAATCCCTTCGTCATTGCAGGTGGGTTGACGAAGTTATCCCAGATGCTCCATGGGTGATCAATCAAGAATTCTTAGACAAGCATAAGATTGACTATGTAGCCCATGATGCCCTTCCGAAACAGCAATTAAAGACAAAATACAAGAGAGCCTGAAGAGGCAGAATTCAGGAAGTCTATCACCTTCAGAAATGCTGGAGAACACAGTGCAGTAGCATAAACTTGTGCTATCTGCCAAGTCATATATTGATTCTTACTAGACAATTTTGTATGTCTCCTACATTTTGCTCAGGAAACTGATGTAAATTGATGTAATTTTGCTTAGAGTTCATTGCTCCGGAAACTGATGTAATTTTGTATGTCTCCTACATTTTGACTATTTTGTTCAATCG

Ace file of the UniGene sp_v3.0_unigene142750

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cholinephosphate cytidylyltransferase [Pisum sativum]	-	-	1.0e-32	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Choline-phosphate cytidylyltransferase B	-	-	1.372e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Choline-phosphate cytidylyltransferase.	EC:2.7.7.15	-	9.275e-19	-

Source	KEGGs	Term	e value	Identity
Sma3	Phosphonate and phosphinate metabolism	00440	9.275e-19	%
Sma3	Glycerophospholipid metabolism	00564	9.275e-19	%
Sma3	Metabolic pathways	01100	9.275e-19	%

Source	Gene names
Sma3	AT4g15130; At2g32260; AtCCT2; CCT; CPCT; GSVIVT00030122001; GSVIVT00037567001; LOC_Os10g42790; OSJNBa0056G17.15; OSJNBa0073A21.13; Os02g0173500; Os08g0161800; Os10g0578900; OsI_06041; OsI_27913; OsI_34790; OsJ_05570; OsJ_26135; OsJ_32592; OsJ_32595; P0577

Source	GOs	Term	Type	Identity
Sma3	choline-phosphate cytidylyltransferase activity	GO:0004105	Molecular Function	-
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G15130.1	ATCCT2, CCT2 phosphorylcholine cytidylyltransferase2 chr4:8637793-8639388 FORWARD LENGTH=304	5.0e-40	85%
RefSeq	Arabidopsis thaliana	NP_193249.5	phosphorylcholine cytidylyltransferase2 [Arabidopsis thaliana]	7.0e-40	85%
RefSeq	Populus trichocarpa	XP_002326446.1	predicted protein, partial [Populus trichocarpa]	1.99993e-41	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUF9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 72 aas, your sequence is shorter than subject: 83 - 315

Fln protein: LFPNTCLLVGCCNDEVTRRYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVINQEFLDKHKIDYVAHDALPKQQLKTKYKRA*

Protein Length: 84

Fln nts: CTGTTTCCAAACACATGTCTCCTTGTGGGTTGCTGCAATGATGAAGTCACTCGCAGGTATAAGGGAAAAACTGTAATGACTGAAGCTGAGCGCTATGAATCCCTTCGTCATTGCAGGTGGGTTGACGAAGTTATCCCAGATGCTCCATGGGTGATCAATCAAGAATTCTTAGACAAGCATAAGATTGACTATGTAGCCCATGATGCCCTTCCGAAACAGCAATTAAAGACAAAATACAAGAGAGCCTGAAGAGGCAGAATTCAGGAAGTCTATCACCTTCAGAAATGCTGGAGAACACAGTGCAGTAGCATAAACTTGTGCTATCTGCCAAGTCATATATTGATTCTTACTAGACAATTTTGTATGTCTCCTACATTTTGCTCAGGAAACTGATGTAAATTGATGTAATTTTGCTTAGAGTTCATTGCTCCGGAAACTGATGTAATTTTGTATGTCTCCTACATTTTGACTATTTTGTTCAATCG

Fln Alignment:

AllPine_a_rep_c108468___LFPNTCLLVGCCNDEVTRRYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVINQEFLDKHKIDYVAHDALP
A9NUF9________________LFPNTFLLVGCCNDEVTRRYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVINREFIDKHQIDYVAHDALP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
181	66		33		0.997459
182	66		33		0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain