SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142715

Length: 469 nt

UniGene Fasta

>sp_v3.0_unigene142715
CTTGAGCTTCCAGAAGGTGGTGGGATGGAGGGAGCAACCCTTGTTTCCATTAGGCCTACCGATCGACCGATTAAGAAGGATACAGAAGCTTTTCTAGCAGGGGCATTTGATGAGCCATTTGGCGCGGCTGCGAAGGAAATGGTGAAGAAGAGGACTTACCTTTTGGAAATGAATTCTTTCTAGCTGATGCAGAACAGAAGGTAGGCTGGGCTGCTCACACATAATGGATCTTCGACACAAGAAAGTCCAACCTTATGTTCTGGGGACAATACTCTGAGATTCTGTTTTCATATAAGGCAAATTTCTTCTTGTATTTGTGGTTTCTGGCTGGTCTAGTCACCTTTGCACATGATCCTTTAAAGGCAATCTGAAATTTGGCCTGCATGGCTAGATTCATTCTCTGGTGATGAGGATTATGCCCATTGTAAATTGTTCAGTTTGAAGCTTTGTAATATTATCATTATAACCC

Ace file of the UniGene sp_v3.0_unigene142715

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box protein [Arabidopsis thaliana] ref\|NP_001190761.1\| F-box protein [Arabidopsis thaliana] sp\|O49508.1\|FB237_ARATH RecName: Full=F-box protein At4g18380 emb\|CAA16718.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB78840.1\| hypothetical protein [A	-	-	7.0e-11	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	Gene names
Sma3	PHYPADRAFT_162882; PHYPADRAFT_188559; POPTRDRAFT_568418;

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G18380.1	F-box family protein chr4:10157957-10159099 FORWARD LENGTH=380	3.0e-14	55%
RefSeq	Arabidopsis thaliana	NP_001190761.1	F-box protein [Arabidopsis thaliana]	4.0e-14	55%
RefSeq	Populus trichocarpa	XP_002317281.1	predicted protein [Populus trichocarpa]	5.0e-14	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW74

Fln msg: your sequence is shorter than subject: 61 - 361

Fln protein: LELPEGGGMEGATLVSIRPTDRPIKKDTEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNSF*

Protein Length: 62

Fln nts: CTTGAGCTTCCAGAAGGTGGTGGGATGGAGGGAGCAACCCTTGTTTCCATTAGGCCTACCGATCGACCGATTAAGAAGGATACAGAAGCTTTTCTAGCAGGGGCATTTGATGAGCCATTTGGCGCGGCTGCGAAGGAAATGGTGAAGAAGAGGACTTACCTTTTGGAAATGAATTCTTTCTAG___CTGATGCAGAACAGAAGGTAGGCTGGGCTGCTCACACATAATGGATCTTCGACACAAGAAAGTCCAACCTTATGTTCTGGGGACAATACTCTGAGATTCTGTTTTCATATAAGGCAAATTTCTTCTTGTATTTGTGGTTTCTGGCTGGTCTAGTCACCTTTGCACATGATCCTTTAAAGGCAATCTGAAATTTGGCCTGCATGGCTAGATTCATTCTCTGGTGATGAGGATTATGCCCATTGTAAATTGTTCAGTTTGAAGCTTTGTAATATTATCATTATAACCC

Fln Alignment:

AllPine_a_rep_c108382___LELPEGGGMEGATLVSIRPTDRPIKKDTEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNSF
A9NW74________________LELPEGGGMEGATLVSIRPSDRPIKKDAEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNSF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
12	66	33			0.997458
14	66			33	0.997458
15	66	33			0.997458
19	33			66	0.997458
20		33	66		0.997458
21		33	66		0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain