SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142712

Length: 370 nt

UniGene Fasta

>sp_v3.0_unigene142712
TGGGTGTTTTATGATTATCACACGAGACAACAATGCTTTCGGTCATGCTTTCAGAGATTATGAAAAGGAAAGTGTGAGACGGGCTGGTGTGCAAGAGTTTTACAGATTGAATCACGTCAACCAGTCTTATGAATATGTATTAAGCAAGCGTGAACAGTATGGTAAGCTTGACAAAACTGTTATGAGCATCTGGGAATGCTGTGAACTCTTAAACGAGTTTGTTGATGAGAGTGACCCTGACCTTGATGAACCTCAAATAGAACACCTGCTACAAACAGCAGAGGCTATTCGTAAAGATTACCCAAATGAAGATTGGCTTCATTTGACTGGCCTAATCCATGATTTGGGCAAGGTACTACTTCATCCTAAC

Ace file of the UniGene sp_v3.0_unigene142712

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	inositol oxygenase 1 [Arabidopsis thaliana] sp\|Q8L799.1\|MIOX1_ARATH RecName: Full=Inositol oxygenase 1; AltName: Full=Myo-inositol oxygenase 1; Short=AtMIOX1; Short=MI oxygenase 1 gb\|AAM97054.1\| unknown protein [Arabidopsis thaliana] gb\|AAN15506.1\| unknow	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Myoinositol oxygenase, putative	-	-	8.801e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Inositol oxygenase.	EC:1.13.99.1	-	4.768e-37	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		4.768e-37	%
Sma3	Inositol phosphate metabolism	00562		4.768e-37	%

Source	Gene names
Sma3	At1g14520; At2g19800; At4g26260; At5g56640; F14L17.30; F6F22.17; GSVIVT00016624001; GSVIVT00034252001; LOC_Os06g36560; MIK19.9; MIOX; MIOX1; MIOX2; MIOX4; MIOX5; Os06g0561000; OsI_23379; OsJ_21699; P0456F09.5; P0528E12.30; PHYPADRAFT_58210; POPTRDRAFT_418

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	inositol oxygenase activity	GO:0050113	Molecular Function	-
Sma3	inositol catabolic process	GO:0019310	Biological Process	-
Sma3	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Inositol oxygenase	IPR007828	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G14520.1	MIOX1 myo-inositol oxygenase 1 chr1:4968376-4969954 REVERSE LENGTH=311	77%
RefSeq	Arabidopsis thaliana	NP_001154337.1	inositol oxygenase 1 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002311571.1	predicted protein, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NU49

Fln msg: Distance to subject end: 154 aas, your sequence is shorter than subject: 123 - 316

Fln protein: GCFMIITRDNNAFGHAFRDYEKESVRRAGVQEFYRLNHVNQSYEYVLSKREQYGKLDKTVMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPN

Protein Length: 124

Fln nts: TGGGTGTTTTATGATTATCACACGAGACAACAATGCTTTCGGTCATGCTTTCAGAGATTATGAAAAGGAAAGTGTGAGACGGGCTGGTGTGCAAGAGTTTTACAGATTGAATCACGTCAACCAGTCTTATGAATATGTATTAAGCAAGCGTGAACAGTATGGTAAGCTTGACAAAACTGTTATGAGCATCTGGGAATGCTGTGAACTCTTAAACGAGTTTGTTGATGAGAGTGACCCTGACCTTGATGAACCTCAAATAGAACACCTGCTACAAACAGCAGAGGCTATTCGTAAAGATTACCCAAATGAAGATTGGCTTCATTTGACTGGCCTAATCCATGATTTGGGCAAGGTACTACTTCATCCTAAC

Fln Alignment:

AllPine_a_rep_c108367___ITRDNNAFGHAFRDYEKESVRRAGVQEFYRLNHVNQSYEYVLSKREQYGKLDKTVMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPN
A9NU49________________VTPDSNAFGHSFRDYDKESERRAGVQEFYRINHINQTYEYVLSKREHYGKLDKAVMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
204	66		33		0.997452
304		66	33		0.997471

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain