SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142604

Length: 275 nt

UniGene Fasta

>sp_v3.0_unigene142604
CTTGCCCGAAACTTCCAGTTCCCAGTATTGGGTCAGCCACCTCAGTCATTTCTATCAACAATGGAAGAATATATTCGAGATGCTCCTCGTGTGGTTCCTGTAGCAAGAGAGGTGCTGGAATTTCAGGAGAAACATCTTCTGACCTATAAACCTGAAGAAGCTTCTCCTTCAGAGGACCAAAAAGAGAAGAAACTGCAGAGGAGCCAAAAGTTAGATTGAGGACTTAAAGACTGCACCGGCAGACTTCCGTTTCCACAACTATCAAACTAGGCACT

Ace file of the UniGene sp_v3.0_unigene142604

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Clathrin assembly protein AP180 short form-like n=2 Tax=Oryza sativa RepID=Q5N9P9_ORYSJ	-	-	3.0e-15	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%

Source	Gene names
Sma3	At1g14910; F10B6.32; GSVIVT00030545001; Os01g0694900; Os05g0549000; OsI_03369; OsI_20869; OsJ_03107; OsJ_19442; P0431H09.25; PHYPADRAFT_92704; POPTRDRAFT_1090667; POPTRDRAFT_564639; RCOM_0629240;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	coated pit	GO:0005905	Cellular Component	-
Sma3	clathrin coat	GO:0030118	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	phospholipid binding	GO:0005543	Molecular Function	-
Sma3	1-phosphatidylinositol binding	GO:0005545	Molecular Function	-
Sma3	clathrin binding	GO:0030276	Molecular Function	-
Sma3	endocytosis	GO:0006897	Biological Process	-
Sma3	clathrin coat assembly	GO:0048268	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	ANTH	IPR011417	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-
Sma3	Clathrin adaptor, phosphoinositide-binding, GAT-like	IPR014712	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G01600.1	ENTH/ANTH/VHS superfamily protein chr2:268975-272356 FORWARD LENGTH=571	3.0e-16	56%
RefSeq	Arabidopsis thaliana	NP_565267.1	putative clathrin assembly protein [Arabidopsis thaliana]	4.0e-16	56%
RefSeq	Populus trichocarpa	XP_002311513.1	predicted protein [Populus trichocarpa]	6.0e-17	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKD7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 180 aas, your sequence is shorter than subject: 73 - 547

Fln protein: LARNFQFPVLGQPPQSFLSTMEEYIRDAPRVVPVAREVLEFQEKHLLTYKPEEASPSEDQKEKKLQRSQKLD*

Protein Length: 74

Fln nts: CTTGCCCGAAACTTCCAGTTCCCAGTATTGGGTCAGCCACCTCAGTCATTTCTATCAACAATGGAAGAATATATTCGAGATGCTCCTCGTGTGGTTCCTGTAGCAAGAGAGGTGCTGGAATTTCAGGAGAAACATCTTCTGACCTATAAACCTGAAGAAGCTTCTCCTTCAGAGGACCAAAAAGAGAAGAAACTGCAGAGGAGCCAAAAGTTAGATTGAGGACTTAAAGACTGCACCGGCAGACTTCCGTTTCCACAACTATCAAACTAGGCACT

Fln Alignment:

AllPine_a_rep_c108034___LARNFQFPVLGQPPQSFLSTMEEYIRDAPRVVPVAREVLEFQEKHLLTYKPEEASPSED
B8LKD7________________LGRGFKFPTLEQPPASFISAMEEYVRDAPRASSARRELIESVPKTLALEYKKKSDPQDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain