SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142589

Length: 458 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene142589
ATGGGGATTGTAATGCAAACACACAGGGTAAGTGATTAGGGCGGGTTCTCTGCGCCTGAGAGGATTGGGCTCCTTTGCCTTTCAAATTCAAGCCTCCAACCTGAATCCCGGCCGCTGGTTTTAGTGACTCGGAGTGATTTTTTAGTCTTTTTCTGTAAAAATTGCTGGAGCGGAAGAATCAGCCATGTCTGGCGTTGACAATGGCGGAACCCCGAGTGTCACCACTCAGGAGGAAGAGAGGAAGCCCATGGACCAGGGTGCCCACATTAATCTCAAGGTCAAGGGCCAGGCAATCCGTTGATTTTAACTCCATAGCGTTTCTGTTTGATGGGAGGCGTTTACGAGGTGAACAAACTCCTGAAGAACTTGAAATGGAAGATGGGGATGAGATTGATGCCATGCTTCATCAAACAGGAGGCAGGCGTTAAAGTGCTGCAAACTGGATGACAACCACTTTC

Ace file of the UniGene sp_v3.0_unigene142589 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin-like protein [Pisum sativum]	-	-	4.0e-17	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Ubiquitin-like protein SMT3	-	-	7.691e-16	-

Source	Gene names
Sma3	At4g26840; At5g55160; F10M23.180; GSVIVT00005895001; GSVIVT00006648001; GSVIVT00010419001; GSVIVT00012332001; GSVIVT00025945001; Os01g0918200; Os01g0918300; OsI_04942; OsI_04943; OsJ_04554; OsJ_04555; P0413C03.33; PHYPADRAFT_150469; PHYPADRAFT_163856; POP

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	protein tag	GO:0031386	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	protein sumoylation	GO:0016925	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55160.2	-	3.0e-23	78%
RefSeq	Arabidopsis thaliana	NP_200327.1	small ubiquitin-related modifier 2 [Arabidopsis thaliana]	3.0e-23	78%
RefSeq	Populus trichocarpa	XP_002321150.1	predicted protein [Populus trichocarpa]	4.0e-23	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN85

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 82 - 105

Fln protein: MSGVDNGGTPSVTTQEEERKPMxxxxxxxxxxxxxxQSVDFNSIAFLFDGRRLRGEQTPEELEMEDGDEIDAMLHQTGGRR*

Protein Length: 83

Fln nts: ATGGGGATTGTAATGCAAACACACAGGGTAAGTGATTAGGGCGGGTTCTCTGCGCCTGAGAGGATTGGGCTCCTTTGCCTTTCAAATTCAAGCCTCCAACCTGAATCCCGGCCGCTGGTTTTAGTGACTCGGAGTGATTTTTTAGTCTTTTTCTGTAAAAATTGCTGGAGCGGAAGAATCAGCC_-_ATGTCTGGCGTTGACAATGGCGGAACCCCGAGTGTCACCACTCAGGAGGAAGAGAGGAAGCCCATGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAATCCGTTGATTTTAACTCCATAGCGTTTCTGTTTGATGGGAGGCGTTTACGAGGTGAACAAACTCCTGAAGAACTTGAAATGGAAGATGGGGATGAGATTGATGCCATGCTTCATCAAACAGGAGGCAGGCGTTAA___AGTGCTGCAAACTGGATGACAACCACTTTC

Fln Alignment:

AllPine_a_rep_c107965___MSGVDNGGTPSVTTQEEERKPMDQGAHINLKVKGQxxxxxxxxxxxxTRVPTLISRSRARQSVDFNSIAFLFDGRRLRGEQTPEELEMEDGDEIDAMLHQTGGRR
A9NN85________________MSGVDNGGTPGATNQEEEKKPMDQGAHINLKVKGQxxxxxxxxxxxxTQLRKLMNAYCDRQSVDFNSIAFLFDGRRLRGEQTPEELEMEDGDEIDAMLHQTGGRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain