SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142580

Length: 870 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene142580

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein transport SEC13-like protein [Solanum tuberosum]	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	Gene names
Sma3	At2g30050; At3g01340; CHLREDRAFT_139713; GSVIVT00001653001; GSVIVT00020856001; GSVIVT00033406001; LOC_Os03g61630; MICPUCDRAFT_48340; MICPUN_95648; OJ1058_C08.35; OSJNBa0003K21.19; OSJNBa0078D06.24; OSJNBa0081C13.10; OSJNBb0027B08.3; OSTLU_17465; Os02g0135

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	viral capsid	GO:0019028	Cellular Component	-
Sma3	1-alkyl-2-acetylglycerophosphocholine esterase activity	GO:0003847	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30050.1	transducin family protein / WD-40 repeat family protein chr2:12825540-12826448 FORWARD LENGTH=302	71%
RefSeq	Arabidopsis thaliana	NP_180566.1	protein transport protein SEC13 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002321555.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0I2

Fln msg: Separated hits, possible frame ERROR between 480 and 512, your sequence is shorter than subject: 234 - 283

Fln protein: SMLASCSYDGRVIIWREGQQENEWSQVQVFKEHEASVNSISWAPNELGLCLACGSSDGSITVFTCREDGSWDKTKIDQAHQVGVTAVSWAPASAPGSLVGQPSDPIRKLVSGRCDNTAKVWKFYNGSWKLDCFPPLQMHTDWVRDVAWAPNLGLPKSTIxxxxxxxxxxxxIWTQGKEGDKWEGKLLNDFKIPVWRVNWSLTGNILAVADGNNSVTLWKEAVDGDWNQVTTVQ*

Protein Length: 235

Fln nts: TCCATGCTCGCTTCCTGCTCATATGACGGACGCGTAATAATCTGGCGAGAGGGTCAGCAGGAGAATGAATGGTCACAGGTTCAAGTCTTCAAAGAGCACGAGGCCTCTGTGAATTCGATCTCATGGGCACCCAATGAATTGGGACTCTGCCTGGCCTGTGGTTCCTCTGACGGGTCCATAACCGTCTTTACATGCCGCGAGGATGGGTCCTGGGACAAAACGAAGATAGATCAAGCCCACCAGGTGGGCGTGACGGCAGTTTCATGGGCGCCCGCTTCCGCTCCCGGTTCCCTTGTGGGTCAGCCCTCAGATCCCATTCGGAAGCTCGTTTCTGGTAGGTGTGATAATACAGCTAAGGTTTGGAAATTTTACAATGGTTCTTGGAAGCTAGATTGTTTTCCTCCTCTTCAAATGCATACGGATTGGGTTCGGGATGTTGCTTGGGCGCCCAATTTAGGGCTTCCCAAGAGTACTATTGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATATGGACACAGGGGAAAGAAGGGGATAAATGGGAAGGAAAACTTTTGAATGATTTTAAGATCCCCGTCTGGAGGGTCAACTGGTCCTTGACTGGAAACATCTTAGCTGTCGCTGATGGGAACAACAGTGTGACTCTTTGGAAGGAGGCAGTAGACGGGGATTGGAATCAGGTGACCACAGTACAGTGACAAATGTATTTGTTGTAGCATGATACTTTTTTGGATGCTAGAGACCATGTAGAGCCTGTTTGTTGATGTATTTTTGGTTCAGAGATGAATTGCACTTGGTGCTATTTTGGTTATTTTGCTTATTTGTGTATAAATGGTTGGATTCATATGGATGCACATGAATATATATG

Fln Alignment:

AllPine_a_rep_c107927___SMLASCSYDGRVIIWREGQQENEWSQVQVFKEHEASVNSISWAPNELGLCLACGSSDGSITVFTCREDGSWDKTKIDQAHQVGVTAVSWAPASAPGSLVGQPSDPIRKLVSGRCDNTAKVWKFYNGSWKLDCFPPLQMHTDWVRDVAWAPNLGLPKSTIAxxxxxxxxxxxIWTQGKEGDKWEGKLLNDFKIPVWRVNWSLTGNILAVADGNNSVTLWKEAVDGDWNQVTTVQ
A9P0I2________________SILASCSYDRRVIIWQEGQQENAWSQLQVFKEHEASVNSVSWAPHELGLCLACGSSDGSITVFTRREDESWDKTKIDQAHQVGVTAVSWAPASAPGSLVGQPSDPIQKLVSGGCDNTAKVWKFYNGSWKLDCFPPLQMHTDWVRDVAWAPNLGLPKSTIAxxxxxxxxxxxIWTQGKEGDKWEGKILNDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWNQVITVQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain