SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142506

Length: 455 nt

UniGene Fasta

>sp_v3.0_unigene142506
CGTCGTGACCTTGGCTGTCACTCAATGTGTTCAGATGGAAAAATCTGTGGACTGTGCTTGCAGAGAAGCTGGAGGTGGAGGCGGGTGATTTTGTTGTGACTCTTGTCTTCCTTGGCAGAGGAGATGAAAAGTAAGAGCGGTGTGTGGGAGGAGATTGTGAAGGAGAAGGGGCTTGTAAAGAGCAGGCTTGAAGAACTGGGGGAACAATGGTGGTTATCTGTTGACAGAATATTGAACAGGAATTTGATGAAGGGTGTGAGCATGAGCATGAACAAGAGCGAGGACAATGGTTTTCTGGGGTTTAGGAACACAGAGAGGTCTTGTCTTCAATGGATCGATATGCTGAAAATCCATAAAATCATTCCTTGATTGAAAGGCACAGAAAACAGGCATGGCTAATTGCAGATTCAAAAGTTGCAGAGCATATATAGTCTCTCTTCTTGATTAGGATAAAA

Ace file of the UniGene sp_v3.0_unigene142506

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Progesterone 5-beta-reductase, putative n=1 Tax=Medicago truncatula RepID=Q2HRJ8_MEDTR	-	-	2.0e-18	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	Gene names
Sma3	GSVIVT00007733001;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G24220.1	VEP1, AWI31 NAD(P)-binding Rossmann-fold superfamily protein chr4:12565219-12566474 FORWARD LENGTH=388	4.0e-18	50%
RefSeq	Arabidopsis thaliana	NP_194153.1	WcaG domain-containing protein [Arabidopsis thaliana]	5.0e-18	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUS7

Fln msg: Separated hits, possible frame ERROR between 80 and 115, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 123 - 399

Fln protein: S*PWLSLNVFRWKNLWTVLAEKLEVxxxxxxxxxxxxxAEEMKSKSGVWEEIVKEKGLVKSRLEELGEQWWLSVDRILNRNLMKGVSMSMNKSEDNGFLGFRNTERSCLQWIDMLKIHKIIP*

Protein Length: 124

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTGTTCAGATGGAAAAATCTGTGGACTGTGCTTGCAGAGAAGCTGGAGGTGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGCAGAGGAGATGAAAAGTAAGAGCGGTGTGTGGGAGGAGATTGTGAAGGAGAAGGGGCTTGTAAAGAGCAGGCTTGAAGAACTGGGGGAACAATGGTGGTTATCTGTTGACAGAATATTGAACAGGAATTTGATGAAGGGTGTGAGCATGAGCATGAACAAGAGCGAGGACAATGGTTTTCTGGGGTTTAGGAACACAGAGAGGTCTTGTCTTCAATGGATCGATATGCTGAAAATCCATAAAATCATTCCTTGATTGAAAGGCACAGAAAACAGGCATGGCTAATTGCAGATTCAAAAGTTGCAGAGCATATATAGTCTCTCTTCTTGATTAGGATAAAA

Fln Alignment:

AllPine_a_rep_c107607___NVFRWKNLWTVLAEKLEVExxxxxxxxxxxxAEEMKSKSGVWEEIVKEKGLVKSRLEELGEQWWLSVDRILNRNLMKGVSMSMNKSEDNGFLGFRNTERSCLQWIDMLKIHKIIP
A9NUS7________________DVFKWKRLWKIIAEKFDLExxxxxxxxxxxxAEVMKDKGPVWDAIVGENKLHPTKIEEVGN-WWFA-DLVLNPPW--GTVLSMNKSKEYGFFGFRNTETSMGQWIDKVRSSNIVP

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
94		33	33	33	0.997752
96	33	33		33	0.997752
97		33	33	33	0.997752
100		33	66		0.997476
107	33		33	33	0.997753
108			66	33	0.997458
109	33		33	33	0.997752
112		33	33	33	0.997752
113		66		33	0.997476
177		20		80	0.995496
180	80	20			0.995497
181	80		20		0.995497
182	80			20	0.995497
185		20	80		0.995496
188	75			25	0.996473
194		25	75		0.996473
196	75			25	0.996473
197		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain