SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142280

Length: 1170 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene142280

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tubulin alpha-3/alpha-5 chain [Arabidopsis thaliana] ref\|NP_197479.1\| tubulin alpha-3/alpha-5 chain [Arabidopsis thaliana] ref\|XP_002871906.1\| tubulin alpha-3 [Arabidopsis lyrata subsp. lyrata] ref\|XP_002873963.1\| tubulin alpha-3 [Arabidopsis lyrata subsp	-	-	0.0	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	99%
Sma3	Alpha-tubulin	-	-	2.884e-33	-

Source	Gene names
Sma3	AT1; AT4G14960; ATUB3; ATub4; At1g04820; At1g64740; At4g14960; BYtuba; F13O11.5; GSVIVT00010650001; GSVIVT00015032001; GSVIVT00020930001; GSVIVT00024805001; GSVIVT00038615001; LOC_Os03g11970; LOC_Os03g51600; MtrDRAFT_AC170580g1v1; OSJNBa0013A09.14; OSJNBb

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19780.1	TUA5 tubulin alpha-5 chr5:6687212-6688926 FORWARD LENGTH=450	97%
RefSeq	Arabidopsis thaliana	NP_197479.1	tubulin alpha-3/alpha-5 chain [Arabidopsis thaliana]	97%
RefSeq	Populus trichocarpa	XP_002303998.1	tubulin alpha-2 chain [Populus trichocarpa]	95%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
587	20			70	0.999998
589	20	80			0.999996

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain